Bioconductor Time-series

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 10 months ago by ATpoint ★ 4.2k • written 10 months ago by Debebe • 0

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644

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 18 months ago by Michael Love 42k • written 19 months ago by arshad1292 • 0

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824

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time-series mfuzz replace=FALSE

2.1 years ago soda ▴ 80

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840

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half-life DESeq2 time-series

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by Xianjun Dong ▴ 10

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1.9k

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deseq2 cancer rna-seq time-series

4.9 years ago mah19 • 0

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2.8k

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deseq2 time-series design matrix edger

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.1k

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deseq2 time-series without replicate

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by bahlv • 0

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1.4k

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deseq2 timecourse multiple time points time-series

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by zhangfei-123 • 0

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1.5k

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DESeq2 time-series

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by gtechbio ▴ 10

9 results • Page 1 of 1

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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…

Comment: error loading collectTRI regulon by silvaesilva.da • 0

Fantastic. Thank you very much. Everything has been sorted out

Answer: DESeq2 returns results for group with just one replicate by James W. MacDonald 66k

There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …

Answer: Limma model.matrix design with batch effect and different life stages proportion by Masongeorge • 0

Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.

Comment: error loading collectTRI regulon by deeenes ▴ 50

I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…

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Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

Answer: DESeq2 returns results for group with just one replicate

Comment: error loading collectTRI regulon

A: Scaling option in fastMNN

Awards • All

Scholar to James W. MacDonald 66k