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0
votes
0
replies
3.3k
views
Comment:
C: Interaction with DESeq2 via DiffBind
7.5 years ago
rbronste
▴ 60
0
votes
0
replies
971
views
Comment:
C: Pre-filtering DESeqDataSetFromMatrix input
7.5 years ago
rbronste
▴ 60
1
vote
2
replies
971
views
Pre-filtering DESeqDataSetFromMatrix input
deseq2
differential binding analysis
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
rbronste
▴ 60
2
votes
1
reply
1.3k
views
Receiving error trying to import matrix into DESeq2
deseq2
deseq
differential binding analysis
updated 7.5 years ago by
Andy91
▴ 60 • written 7.5 years ago by
rbronste
▴ 60
1
vote
1
reply
1.6k
views
Changing R package dependencies
package installation
dependencies
bagfootr
bagfoot
updated 7.5 years ago by
Sean Davis
21k • written 7.5 years ago by
rbronste
▴ 60
0
votes
1
reply
1.4k
views
Pseudo-coloring DiffBind volcano plot
diffbind
chipseq
volcanoplot
ggplot2
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
rbronste
▴ 60
1
vote
2
replies
1.6k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
rbronste
▴ 60
0
votes
0
replies
1.4k
views
Assigning stats to differential peak locations relative to TSS
chipseeker
chipseq
statistics
7.6 years ago
rbronste
▴ 60
2
votes
1
reply
3.5k
views
ChIPseeker mapping between keys and columns
chipseeker
chipseq
updated 7.6 years ago by
Gavin Kelly
▴ 690 • written 7.6 years ago by
rbronste
▴ 60
1
vote
1
reply
1.0k
views
Diffbind Consensus vs Differential peak sets from same count
diffbind
chipseq
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
rbronste
▴ 60
0
votes
0
replies
1.2k
views
Comment:
C: DiffBind masks for counts
7.7 years ago
rbronste
▴ 60
0
votes
0
replies
1.7k
views
Comment:
C: DiffBind contrasts issue
7.7 years ago
rbronste
▴ 60
1
vote
2
replies
1.2k
views
DiffBind masks for counts
diffbind
chipseq
updated 7.7 years ago by
Rory Stark
★ 5.2k • written 7.7 years ago by
rbronste
▴ 60
2
votes
2
replies
1.7k
views
DiffBind contrasts issue
diffbind
chipseq
updated 7.7 years ago by
Rory Stark
★ 5.2k • written 7.7 years ago by
rbronste
▴ 60
0
votes
0
replies
3.3k
views
Comment:
C: samtools loading in R
7.7 years ago
rbronste
▴ 60
3
votes
5
replies
3.3k
views
samtools loading in R
samtools
rsamtools
updated 13 days ago by
Charlie
• 0 • written 7.7 years ago by
rbronste
▴ 60
0
votes
1
reply
2.2k
views
Comment:
C: ddCT Package for StepOnePlus qPCR output
7.7 years ago
rbronste
▴ 60
0
votes
0
replies
2.2k
views
Comment:
C: ddCT Package for StepOnePlus qPCR output
7.8 years ago
rbronste
▴ 60
1
vote
4
replies
2.2k
views
ddCT Package for StepOnePlus qPCR output
qPCR
ddCt
geneexpression
updated 7.8 years ago by
Zhang, Jitao David
▴ 120 • written 7.8 years ago by
rbronste
▴ 60
0
votes
2
replies
4.5k
views
Comment:
C: DiffBind BED output with score
7.9 years ago
rbronste
▴ 60
0
votes
0
replies
1.1k
views
Comment:
C: write.table of posterior probabilities error
8.1 years ago
rbronste
▴ 60
0
votes
1
reply
1.1k
views
Comment:
C: write.table of posterior probabilities error
8.1 years ago
rbronste
▴ 60
1
vote
4
replies
1.1k
views
write.table of posterior probabilities error
R
centipede
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
rbronste
▴ 60
1
vote
1
reply
815
views
Sorting the VIEW index in ascending/descending order
R
diffbind
updated 8.1 years ago by
Marcel Ramos
700 • written 8.1 years ago by
rbronste
▴ 60
0
votes
0
replies
1.3k
views
Centipede foot printing export
footprinting
centipede
atac-seq
dnaseq
8.1 years ago
rbronste
▴ 60
0
votes
0
replies
1.0k
views
Visualizing motif instances in peak data
motifs
TF
peakset
plots
8.1 years ago
rbronste
▴ 60
0
votes
1
reply
2.8k
views
Comment:
C: DiffBind MA plot
8.2 years ago
rbronste
▴ 60
2
votes
3
replies
2.8k
views
DiffBind MA plot
diffbind
ma plot
updated 8.2 years ago by
Rory Stark
★ 5.2k • written 8.2 years ago by
rbronste
▴ 60
0
votes
0
replies
4.5k
views
Comment:
C: DiffBind BED output with score
8.2 years ago
rbronste
▴ 60
0
votes
1
reply
4.5k
views
Comment:
C: DiffBind BED output with score
8.2 years ago
rbronste
▴ 60
0
votes
1
reply
4.5k
views
Comment:
C: DiffBind BED output with score
8.2 years ago
rbronste
▴ 60
3
votes
9
replies
4.5k
views
DiffBind BED output with score
diffbind
differential binding analysis
updated 8.2 years ago by
Rory Stark
★ 5.2k • written 8.2 years ago by
rbronste
▴ 60
0
votes
1
reply
739
views
Exporting differential peak sets, based on fold change and FDR
diffbind
updated 8.2 years ago by
Rory Stark
★ 5.2k • written 8.2 years ago by
rbronste
▴ 60
0
votes
1
reply
920
views
Does dba object analysis indicate "score" in dba.count?
diffbind
updated 8.2 years ago by
Rory Stark
★ 5.2k • written 8.2 years ago by
rbronste
▴ 60
0
votes
1
reply
1.3k
views
Answer:
A: Adding SummarizedExperiment function
8.3 years ago
rbronste
▴ 60
2
votes
5
replies
1.3k
views
Adding SummarizedExperiment function
summarizedexperiment
8.3 years ago
rbronste
▴ 60
0
votes
0
replies
1.3k
views
Comment:
C: Adding SummarizedExperiment function
8.3 years ago
rbronste
▴ 60
0
votes
1
reply
999
views
DiffBind q value analysis
diffbind
updated 8.3 years ago by
Gord Brown
▴ 670 • written 8.3 years ago by
rbronste
▴ 60
0
votes
1
reply
2.6k
views
Comment:
C: DiffBind for open chromatin mapping
8.3 years ago
rbronste
▴ 60
0
votes
0
replies
2.6k
views
Comment:
C: DiffBind for open chromatin mapping
8.3 years ago
rbronste
▴ 60
1
vote
4
replies
2.6k
views
DiffBind for open chromatin mapping
diffbind
dnaseseq
atac-seq
8.3 years ago
rbronste
▴ 60
0
votes
0
replies
1.7k
views
Answer:
A: DiffBind EdgeR vs DeSeq2 diff peak counts
8.3 years ago
rbronste
▴ 60
0
votes
3
replies
1.7k
views
DiffBind EdgeR vs DeSeq2 diff peak counts
diffbind
8.3 years ago
rbronste
▴ 60
0
votes
0
replies
1.7k
views
Answer:
A: DiffBind EdgeR vs DeSeq2 diff peak counts
8.3 years ago
rbronste
▴ 60
144 results • Page
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