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maplot
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0
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2
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1.1k
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 16 months ago by
ATpoint
★ 4.2k • written 16 months ago by
Michael
• 0
10
votes
8
replies
2.3k
views
MA plot
MAplot
16 months ago
Nathalie
▴ 20
0
votes
3
replies
2.5k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.3 years ago by
Michael Love
42k • written 3.3 years ago by
sp
• 0
1
vote
1
reply
800
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
evelas13
• 0
1
vote
2
replies
608
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
rbronste
▴ 60
2
votes
2
replies
2.6k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.0 years ago by
Rory Stark
★ 5.2k • written 5.0 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.6 years ago • updated 5.5 years ago
avitalwasser
• 0
5
votes
8
replies
1.3k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.6 years ago by
James W. MacDonald
66k • written 5.6 years ago by
rbronste
▴ 60
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
ma619
• 0
0
votes
1
reply
1.6k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
phurbusang
• 0
2
votes
1
reply
2.1k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
rbronste
▴ 60
2
votes
4
replies
1.6k
views
DiffBind MA plot
diffbind
maplot
updated 6.4 years ago by
Rory Stark
★ 5.2k • written 6.4 years ago by
grundelphine
• 0
1
vote
2
replies
1.3k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.7 years ago by
Rory Stark
★ 5.2k • written 6.7 years ago by
rbronste
▴ 60
0
votes
3
replies
2.7k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.7 years ago by
Michael Love
42k • written 6.7 years ago by
jshouse
▴ 10
3
votes
6
replies
1.9k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.8 years ago by
Gordon Smyth
51k • written 7.8 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.2 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…
Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Votes
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
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