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DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.0 years ago
Mike
▴ 10
1
vote
2
replies
2.6k
views
[DESeq2] Results summary indicates LFC > and < 0 even with changed lfcThreshold
DESeq2
lfcThreshold
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
Mike
▴ 10
2
votes
2
replies
2.8k
views
[DESeq2] Odd patterns in MA plot
deseq2
MA-plot
updated 6.7 years ago by
Ryan C. Thompson
★ 7.9k • written 6.7 years ago by
Mike
▴ 10
0
votes
1
reply
2.4k
views
Comment:
C: DESeq2 experimental design, 2 controls and 2 treated
6.8 years ago
Mike
▴ 10
0
votes
1
reply
2.4k
views
Comment:
C: DESeq2 experimental design, 2 controls and 2 treated
6.8 years ago
Mike
▴ 10
0
votes
1
reply
2.4k
views
Comment:
C: DESeq2 experimental design, 2 controls and 2 treated
6.8 years ago
Mike
▴ 10
1
vote
7
replies
2.4k
views
DESeq2 experimental design, 2 controls and 2 treated
Deseq2
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
Mike
▴ 10
0
votes
0
replies
2.0k
views
Comment:
C: Use interactions to get the difference in the effect of two treatments
6.9 years ago
Mike
▴ 10
0
votes
0
replies
1.1k
views
Comment:
C: Will large differences in the number of reads between samples decrease reliabili
7.1 years ago
Mike
▴ 10
0
votes
2
replies
1.1k
views
Will large differences in the number of reads between samples decrease reliability of DESeq2 analysis?
deseq2
updated 7.1 years ago by
Ryan C. Thompson
★ 7.9k • written 7.1 years ago by
Mike
▴ 10
0
votes
1
reply
2.3k
views
Comment:
C: DESeq2 experimental design
7.1 years ago
Mike
▴ 10
1
vote
3
replies
2.3k
views
DESeq2 experimental design
deseq2
multiple factor design
updated 7.1 years ago by
Gavin Kelly
▴ 690 • written 7.1 years ago by
Mike
▴ 10
2
votes
1
reply
1.2k
views
[DESeq2] Slight difference between lfcMLE and my calculated log2 fold change
deseq2
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
Mike
▴ 10
0
votes
2
replies
5.0k
views
Comment:
C: Annotating DEseq output using AnnotationDbi mapIds and most results say NA
7.9 years ago
Mike
▴ 10
4
votes
8
replies
5.0k
views
Annotating DEseq output using AnnotationDbi mapIds and most results say NA
AnnotationDbi
mapIds
org.Mm.eg.db
ENSEMBLTRANS
updated 7.9 years ago by
James W. MacDonald
67k • written 7.9 years ago by
Mike
▴ 10
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