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MA-plot
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3
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1.4k
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Weird MAplot with DEGs lying along the diagonals
limma
Microarray
AgilentChip
MA-plot
Normalization
3.2 years ago
FedeXander
• 0
1
vote
4
replies
996
views
How to spot genes/transcripts in a MA-plot
ma-plot
deseq2
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
vincentpailler
• 0
0
votes
0
replies
646
views
Do my MA-plots look fine?
ma-plot
5.8 years ago
vincentpailler
• 0
2
votes
2
replies
2.4k
views
[DESeq2] Odd patterns in MA plot
deseq2
MA-plot
updated 6.2 years ago by
Ryan C. Thompson
★ 7.9k • written 6.2 years ago by
Mike
▴ 10
4 results • Page
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Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Answer: makeExampleDESeqDataSet using pilot data
by
Michael Love
42k
`dispMeanRel` would be `dispersionFunction(dds)` from a pilot dataset. It's the relationship between dispersion and mean. `betaSD` is no…
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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