Showing : xcms • reset
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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 6 weeks ago by 68k • written 6 weeks ago by • 0
1
vote
3
replies
750
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 4 months ago by 68k • written 4 months ago by • 0
0
votes
1
reply
547
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 5 months ago by • 0 • written 5 months ago by ▴ 10
0
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2
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3.0k
views
Error: BiocParallel errors
xcms msdata BiocParallel
18 months ago mavamay • 0
0
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0
replies
699
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
21 months ago Abrianna • 0
0
votes
1
reply
742
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 23 months ago by ★ 4.7k • written 23 months ago by • 0
0
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0
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569
views
XCMS normalization
xcms
2.0 years ago T.RU • 0
0
votes
1
reply
812
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 2.1 years ago by • 0 • written 2.4 years ago by ▴ 10
0
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0
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594
views
dont find xcmsSet for peak analysis
xcms
2.4 years ago aline.lafise • 0
1
vote
4
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1.8k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 2.6 years ago by • 0 • written 4.3 years ago by ▴ 30
0
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0
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861
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.8 years ago mba • 0
5
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5
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1.4k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.9 years ago by ★ 2.1k • written 2.9 years ago by ▴ 20
0
votes
3
replies
1.7k
views
Warning messages during intallation of XCMS
xcms Install
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
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0
replies
864
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
3.3 years ago noerman • 0
0
votes
4
replies
18k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
2
replies
1.7k
views
colMax is not exported from the xcms package
xcms
3.8 years ago Habil Zare ▴ 200
0
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0
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915
views
Mass spec intensity difference
xcms
3.9 years ago Phytochem • 0
0
votes
0
replies
908
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.9 years ago abrsoule ▴ 30
0
votes
0
replies
1.7k
views
BiocParallel errors with xcms
BiocParallel xcms
4.0 years ago Yuki ▴ 10
1
vote
3
replies
1.3k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 4.3 years ago by ★ 2.1k • written 4.3 years ago by ▴ 10
0
votes
1
reply
1.9k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 4.3 years ago by 1.6k • written 4.4 years ago by • 0
0
votes
3
replies
1.5k
views
Use xcms but mzR occurs error
software error xcms
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
0
votes
4
replies
1.9k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.5 years ago by 1.6k • written 4.5 years ago by • 0
3
votes
2
replies
1.1k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 4.7 years ago by ★ 2.1k • written 4.7 years ago by ▴ 30
1
vote
2
replies
1.4k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 4.7 years ago by ▴ 20 • written 4.7 years ago by ▴ 30
0
votes
3
replies
2.1k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.8 years ago by ★ 2.1k • written 4.8 years ago by • 0
2
votes
13
replies
2.5k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
5.5 years ago abrsoule ▴ 30
0
votes
5
replies
1.6k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 5.5 years ago by 1.6k • written 5.5 years ago by • 0
2
votes
6
replies
1.9k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 5.6 years ago by ★ 2.1k • written 5.6 years ago by ▴ 10
0
votes
1
reply
1.5k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
5.6 years ago garfield320 ▴ 30
2
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1
reply
1.5k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.9 years ago abrsoule ▴ 30
0
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4
replies
3.2k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.9 years ago lmg • 0
0
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0
replies
1.2k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
6.0 years ago Johannes Rainer ★ 2.1k
0
votes
0
replies
1.6k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 6.1 years ago by • 0 • written 6.3 years ago by ★ 2.1k
0
votes
4
replies
1.8k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
6.5 years ago cpataki • 0
0
votes
9
replies
3.9k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
6.5 years ago goh • 0
3
votes
1
reply
1.2k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 6.5 years ago by 1.6k • written 6.5 years ago by • 0
0
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1
reply
1.8k
views
XCMS for GC-MS
xcms GC-MS
6.6 years ago Joe • 0
0
votes
4
replies
2.3k
views
Chromatographic peak detection failed for all files
xcms
6.7 years ago yuchiu • 0
0
votes
1
reply
1.8k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.9 years ago by ★ 2.1k • written 6.9 years ago by • 0
2
votes
4
replies
1.6k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
7.0 years ago james.dalgleish ▴ 30
1
vote
2
replies
3.5k
views
ReadMSData problem with xcms
xcms readmsdata
updated 7.3 years ago by ★ 2.1k • written 7.3 years ago by ▴ 30
1
vote
5
replies
3.6k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
7.4 years ago bhgyu ▴ 30
5
votes
7
replies
2.8k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 7.4 years ago by ★ 2.1k • written 7.4 years ago by ▴ 30
2
votes
1
reply
2.4k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 7.7 years ago by • 0 • written 9.1 years ago by ▴ 20
0
votes
2
replies
1.4k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 7.7 years ago by 1.6k • written 7.7 years ago by • 0
0
votes
0
replies
1.2k
views
xcmsFragments extract product fragment
xcms xcms2
7.7 years ago riccardo.romoli • 0
1
vote
4
replies
2.1k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 4 months ago by • 0 • written 7.9 years ago by • 0
1
vote
1
reply
1.5k
views
xcms warning message
R xcms warning message
updated 8.2 years ago by ★ 2.1k • written 8.2 years ago by • 0
0
votes
1
reply
1.5k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
8.2 years ago buescher • 0
50 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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