Showing : xcms • reset
1
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620
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 9 weeks ago by 67k • written 9 weeks ago by • 0
0
votes
1
reply
475
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 12 weeks ago by • 0 • written 3 months ago by ▴ 10
0
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2
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2.7k
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Error: BiocParallel errors
xcms msdata BiocParallel
16 months ago mavamay • 0
0
votes
0
replies
626
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
19 months ago Abrianna • 0
0
votes
1
reply
679
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 21 months ago by ★ 4.6k • written 21 months ago by • 0
0
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0
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521
views
XCMS normalization
xcms
22 months ago T.RU • 0
0
votes
1
reply
769
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 23 months ago by • 0 • written 2.2 years ago by ▴ 10
0
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0
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558
views
dont find xcmsSet for peak analysis
xcms
2.2 years ago aline.lafise • 0
1
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4
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1.8k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 2.4 years ago by • 0 • written 4.1 years ago by ▴ 30
0
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0
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812
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.7 years ago mba • 0
5
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5
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1.3k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by ▴ 20
0
votes
3
replies
1.6k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.8 years ago by 67k • written 2.8 years ago by • 0
0
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0
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818
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
3.1 years ago noerman • 0
0
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4
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17k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.3 years ago by 67k • written 3.4 years ago by • 0
0
votes
2
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1.6k
views
colMax is not exported from the xcms package
xcms
3.6 years ago Habil Zare ▴ 200
0
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0
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869
views
Mass spec intensity difference
xcms
3.7 years ago Phytochem • 0
0
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0
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864
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.7 years ago abrsoule ▴ 30
0
votes
0
replies
1.6k
views
BiocParallel errors with xcms
BiocParallel xcms
3.8 years ago Yuki ▴ 10
1
vote
3
replies
1.2k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 4.1 years ago by ★ 2.1k • written 4.1 years ago by ▴ 10
0
votes
1
reply
1.8k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 4.2 years ago by 1.6k • written 4.2 years ago by • 0
0
votes
3
replies
1.4k
views
Use xcms but mzR occurs error
software error xcms
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
0
votes
4
replies
1.8k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.4 years ago by 1.6k • written 4.4 years ago by • 0
3
votes
2
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1.1k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 4.5 years ago by ★ 2.1k • written 4.5 years ago by ▴ 30
1
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2
replies
1.3k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 4.5 years ago by ▴ 20 • written 4.5 years ago by ▴ 30
0
votes
3
replies
1.9k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.7 years ago by ★ 2.1k • written 4.7 years ago by • 0
2
votes
13
replies
2.4k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
5.3 years ago abrsoule ▴ 30
0
votes
5
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1.5k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 5.3 years ago by 1.6k • written 5.3 years ago by • 0
2
votes
6
replies
1.9k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 5.4 years ago by ★ 2.1k • written 5.4 years ago by ▴ 10
0
votes
1
reply
1.4k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
5.4 years ago garfield320 ▴ 30
2
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1
reply
1.4k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.8 years ago abrsoule ▴ 30
0
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4
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3.1k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.8 years ago lmg • 0
0
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0
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1.2k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.8 years ago Johannes Rainer ★ 2.1k
0
votes
0
replies
1.6k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 6.0 years ago by • 0 • written 6.1 years ago by ★ 2.1k
0
votes
4
replies
1.7k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
6.3 years ago cpataki • 0
0
votes
9
replies
3.6k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
6.4 years ago goh • 0
3
votes
1
reply
1.1k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 6.4 years ago by 1.6k • written 6.4 years ago by • 0
0
votes
1
reply
1.8k
views
XCMS for GC-MS
xcms GC-MS
6.4 years ago Joe • 0
0
votes
4
replies
2.2k
views
Chromatographic peak detection failed for all files
xcms
6.5 years ago yuchiu • 0
0
votes
1
reply
1.7k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by • 0
2
votes
4
replies
1.5k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.8 years ago james.dalgleish ▴ 30
1
vote
2
replies
3.4k
views
ReadMSData problem with xcms
xcms readmsdata
updated 7.1 years ago by ★ 2.1k • written 7.1 years ago by ▴ 30
1
vote
5
replies
3.5k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
7.2 years ago bhgyu ▴ 30
5
votes
7
replies
2.7k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 7.2 years ago by ★ 2.1k • written 7.2 years ago by ▴ 30
2
votes
1
reply
2.3k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 7.5 years ago by • 0 • written 8.9 years ago by ▴ 20
0
votes
2
replies
1.4k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 7.5 years ago by 1.6k • written 7.5 years ago by • 0
0
votes
0
replies
1.2k
views
xcmsFragments extract product fragment
xcms xcms2
7.5 years ago riccardo.romoli • 0
1
vote
4
replies
2.0k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 9 weeks ago by • 0 • written 7.7 years ago by • 0
1
vote
1
reply
1.4k
views
xcms warning message
R xcms warning message
updated 8.1 years ago by ★ 2.1k • written 8.1 years ago by • 0
0
votes
1
reply
1.4k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
8.1 years ago buescher • 0
1
vote
7
replies
2.6k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 8.1 years ago by ★ 2.1k • written 8.1 years ago by • 0
50 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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