Showing : wgcna • reset
6
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3.8k
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WGCNA coupled with differential expression analysis: question about baseline module detection
wgcna WGCNA
written 4.6 years ago by ▴ 60
0
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0
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86
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WGCNA module preservation using only adjacency matrix
WGCNA
7 days ago yang1641 • 0
3
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4
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423
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What should be the normalization protocol for RNA seq data for WGCNA?
RNA_seqdata Normalization_method WGCNA
5 weeks ago sukeshinik5 ▴ 20
1
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1
reply
277
views
WGCNA
DEGselection RNASeqData WGCNA
updated 6 weeks ago by ▴ 760 • written 6 weeks ago by • 0
0
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0
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179
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WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
8 weeks ago Fernanda • 0
0
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1
reply
255
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WGCNA Choosing soft threshold power below R^2 0.8
WGCNA
updated 9 weeks ago by ▴ 760 • written 9 weeks ago by • 0
0
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1
reply
273
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Ideal approach to adjust for covariates for WGCNA
WGCNA wgcna
updated 10 weeks ago by 67k • written 10 weeks ago by • 0
0
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6
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2.6k
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blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 19 months ago by • 0
1
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3
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3.4k
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WGNCA kME vs. kIM
WGCNA
updated 6 months ago by • 0 • written 9.2 years ago by ▴ 30
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0
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242
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query regarding how to apply WGCNA on replicates
replicatesRNAseq WGCNA
6 months ago k200987 • 0
0
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2
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468
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voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
7 months ago Gimena • 0
0
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2
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535
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WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
7 months ago w.cookson • 0
0
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1
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383
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problem with ClusterRepro function
WGCNA
updated 8 months ago by 67k • written 8 months ago by • 0
0
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1
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746
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WGCNA | plotDendroAndColors ERROR
plotDendroAndColor WGCNA
updated 9 months ago by ★ 4.5k • written 9 months ago by • 0
0
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2
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1.0k
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Trouble generating a dendrogram with colored gene modules using WGCNA for large RNA-seq experiment
WGCNA
written 11 months ago by • 0
4
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3
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1.9k
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WGCNA documentation not available
WGCNA
written 11 months ago by ▴ 10
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2
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1.5k
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 6 months ago by • 0 • written 24 months ago by • 0
0
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1
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1.2k
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WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 11 months ago by • 0 • written 2.9 years ago by • 0
1
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2
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1.1k
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Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData WGCNA consensusnetworks
11 months ago Levi • 0
0
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2
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519
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WGCNA less samples
RNA-Seq WGCNA Worms
12 months ago davca • 0
0
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1
reply
733
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WGCNA tutorial docs needed: Horvath Lab site down
WGCNA
updated 12 months ago by ★ 4.5k • written 12 months ago by • 0
1
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1
reply
672
views
How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
WGCNA
updated 13 months ago by ▴ 200 • written 13 months ago by ▴ 10
0
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1
reply
573
views
TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
TOMsimilarityFromExpr WGCNA
updated 15 months ago by ★ 4.5k • written 15 months ago by • 0
0
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1
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4.3k
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network cluster WGCNA RNASeq
updated 16 months ago by 67k • written 16 months ago by • 0
1
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1
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683
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WGCNA Cluster batch effect
BatchEffect TCGA WGCNA
updated 17 months ago by ★ 4.5k • written 17 months ago by • 0
0
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1
reply
928
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Hub genes selection in WGCNA
wgcna WGCNA hubgene
updated 17 months ago by ★ 4.5k • written 17 months ago by ▴ 20
2
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5
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1.7k
views
DESeq2 remove batch effect
BatchEffect RNASeqData WGCNA DESeq2
updated 7 months ago by • 0 • written 17 months ago by • 0
3
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6
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1.1k
views
Question on constructing design matrix and defining contrasts for analysis
wgcna DESeq2 edgeR limma design
updated 17 months ago by 51k • written 18 months ago by ▴ 10
1
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0
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707
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WGCNA of two different cohorts study
DifferentialExpression WGCNA
updated 17 months ago by 42k • written 18 months ago by ▴ 20
2
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1
reply
792
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WGCNA: many over and under-expressed features in modules of a signed network
WGCNA wgcna_package
updated 17 months ago by ▴ 50 • written 18 months ago by ▴ 10
0
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0
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567
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
18 months ago Levi • 0
3
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7
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1.7k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
18 months ago Ortega-C ▴ 10
0
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1
reply
671
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WGCNA for one perturbation time series (pooled from two independent replicates)?
WGCNA
updated 18 months ago by ★ 4.5k • written 18 months ago by • 0
0
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0
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710
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Problems with the input (from TPM) - How to remove isoforms in WGCNA
Arabidopsis_thaliana removeisoforms WGCNA
19 months ago Ortega-C ▴ 10
0
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2
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800
views
WGCNA problem
WGCNA
updated 19 months ago by ▴ 10 • written 19 months ago by • 0
0
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0
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721
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WGCNA approach on multiregional brain transcriptomes
Neurotranscriptome RNAseq WGCNA
19 months ago Levi • 0
0
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0
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589
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Module Trait Corelation
WGCNA
20 months ago allanokwaro • 0
2
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3
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1.3k
views
Batch correction and Deseq2
DESeq2 WGCNA Normalization NormalyzerDE BatchEffect
updated 20 months ago by ★ 4.5k • written 20 months ago by ▴ 20
0
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0
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633
views
How to draw module significance barplot?
module_significance barplot WGCNA
21 months ago Sooni ▴ 10
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0
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655
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Multiple way network preservation
wgcna
21 months ago madzayasodara • 0
0
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0
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732
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WGCNA TOM file empty
WGCNA TOM
21 months ago gianni.drm • 0
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0
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1.1k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
21 months ago gianni.drm • 0
0
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1
reply
1.2k
views
WGCNA soft thresholding suggesting a power of 1
independence thresholding WGCNA connectivity scale
updated 8 months ago by ▴ 740 • written 21 months ago by • 0
0
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1
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656
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In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 22 months ago by ▴ 50 • written 22 months ago by • 0
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0
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778
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Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
22 months ago S • 0
0
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0
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770
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Problems running WGCNA
WGCNA
23 months ago S • 0
0
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0
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657
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coexpression networks
WGCNA igraph
24 months ago María José • 0
0
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0
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716
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A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
24 months ago Abdullah • 0
0
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0
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1.1k
views
WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
24 months ago • updated 7 weeks ago bioinformaticssrm2011 • 0
2
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1
reply
991
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 2.2 years ago by ▴ 50 • written 2.2 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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