Bioconductor Variance

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4.9k

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supervised edgeR variance RNASeq heatmaps

updated 22 months ago by Gordon Smyth 52k • written 24 months ago by mohammedtoufiq91 ▴ 10

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1.3k

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limma treatment variance

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by ML18 ▴ 10

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1.1k

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deseq2 vst variance

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by Bitao Qiu • 0

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1.6k

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variance formula expression

updated 5.9 years ago by mikhael.manurung ▴ 280 • written 5.9 years ago by rina ▴ 30

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1.1k

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deseq2 variance genes

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by hs.lansdell ▴ 20

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7.2k

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deseq2 counts DESeqtransform variance deviation

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by Casper van Mourik • 0

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1.8k

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deseq2 variance lrt differential gene expression

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by rclaire ▴ 20

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pca variance deseq2 gene_id

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by NMostajo ▴ 10

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2.5k

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limma arrayWeights variance sampleQuality microarray

updated 9.2 years ago by Ryan C. Thompson ★ 7.9k • written 9.2 years ago by svlachavas ▴ 840

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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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