Bioconductor Variance

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supervised edgeR variance RNASeq heatmaps

updated 21 months ago by Gordon Smyth 51k • written 23 months ago by mohammedtoufiq91 ▴ 10

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1.3k

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limma treatment variance

updated 4.9 years ago by Gordon Smyth 51k • written 4.9 years ago by ML18 ▴ 10

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1.0k

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deseq2 vst variance

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by Bitao Qiu • 0

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1.6k

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variance formula expression

updated 5.8 years ago by mikhael.manurung ▴ 280 • written 5.8 years ago by rina ▴ 30

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1.1k

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deseq2 variance genes

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by hs.lansdell ▴ 20

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7.1k

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deseq2 counts DESeqtransform variance deviation

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by Casper van Mourik • 0

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1.7k

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deseq2 variance lrt differential gene expression

updated 7.6 years ago by Ryan C. Thompson ★ 7.9k • written 7.6 years ago by rclaire ▴ 20

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pca variance deseq2 gene_id

updated 8.4 years ago by Michael Love 42k • written 8.4 years ago by NMostajo ▴ 10

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2.4k

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limma arrayWeights variance sampleQuality microarray

updated 9.1 years ago by Ryan C. Thompson ★ 7.9k • written 9.1 years ago by svlachavas ▴ 830

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

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