Bioconductor Formula

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BatchEffect batch RNASeqR formula DESeq2

updated 21 months ago by Michael Love 42k • written 21 months ago by estafana.t98 • 0

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757

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deseq2 design formula

updated 3.6 years ago by Michael Love 42k • written 3.6 years ago by Bine ▴ 40

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2.4k

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deseq2 design formula batch effect

updated 4.3 years ago by swbarnes2 ★ 1.4k • written 4.3 years ago by l.rijnberk • 0

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2.0k

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deseq2 formula controls design

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by taveluz • 0

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1.3k

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variance formula expression

updated 5.3 years ago by mikhael.manurung ▴ 270 • written 5.3 years ago by rina ▴ 30

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1.3k

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DESeq2 design formula matrix

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by t.kuilman ▴ 170

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2.0k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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1.6k

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limma design RNA-seq formula twins

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Simone • 0

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1.8k

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DESeq2 twins design formula RNA-seq

6.6 years ago Simone • 0

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2.3k

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dexseq linear model formula

updated 8.5 years ago by Alejandro Reyes ★ 1.9k • written 8.5 years ago by Cornwell, Adam ▴ 110

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25k

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rnaseq deseq2 formula Limma

9.0 years ago AurelieMLB ▴ 50

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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