Bioconductor Timecoursedata

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923

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DESeq2 timecoursedata GeneExpression

updated 9 months ago by ATpoint ★ 4.7k • written 9 months ago by pangtaihin • 0

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630

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DESeq2 ImpulseDE2 timecour timecoursedata moanin

9 months ago Aurora • 0

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1.9k

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timecoursedata limma

17 months ago • updated 15 months ago triZZla • 0

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2.4k

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 18 months ago by ATpoint ★ 4.7k • written 18 months ago by Debebe • 0

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1.0k

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RNASeqData TimeCourse DESeq2 timecoursedata

updated 7 months ago by Michael Love 43k • written 19 months ago by georgii.vdovin • 0

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634

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timecoursedata edgeR

updated 23 months ago by Gordon Smyth 52k • written 23 months ago by boczniak767 ▴ 740

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883

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DESeq2 timecoursedata replicates

updated 24 months ago by Michael Love 43k • written 24 months ago by fepesanz8 • 0

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860

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.2 years ago by Michael Love 43k • written 2.3 years ago by arshad1292 • 0

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1.2k

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QTL fourier TimeSeriesExperiment timecoursedata

3.9 years ago Daphne • 0

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1.8k

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limma proteomics TMTlabeling timecoursedata

updated 4.3 years ago by SamGG ▴ 360 • written 4.3 years ago by maleknias • 0

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Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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