Showing : timecoursedata • reset
4
votes
9
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802
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Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 7 months ago by ★ 4.6k • written 7 months ago by • 0
0
votes
2
replies
521
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Timecourse RNASeq analysis
DESeq2 ImpulseDE2 timecour timecoursedata moanin
7 months ago Aurora • 0
3
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13
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1.8k
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Timely differentially expressed genes
timecoursedata limma
15 months ago • updated 12 months ago triZZla • 0
1
vote
6
replies
2.1k
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Time-series RNA-seq analysis using DESeq2
time-series DESeq2 RNASeq timecoursedata TimeCourse
updated 16 months ago by ★ 4.6k • written 16 months ago by • 0
2
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1
reply
902
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DESeq2 time course using fitted splines
RNASeqData TimeCourse DESeq2 timecoursedata
updated 5 months ago by 43k • written 17 months ago by • 0
0
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0
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606
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Plot profiles for each group - spline analysis in edgeR
timecoursedata edgeR
updated 21 months ago by 52k • written 21 months ago by ▴ 740
0
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2
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845
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DESeq2 replicates in time course data
DESeq2 timecoursedata replicates
updated 22 months ago by 43k • written 22 months ago by • 0
0
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1
reply
808
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2 time-series timecoursedata timecourse multifactorial
updated 2.1 years ago by 43k • written 2.1 years ago by • 0
0
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0
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1.2k
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Job: Biostatistics Research Associate, York, UK
QTL fourier TimeSeriesExperiment timecoursedata
3.7 years ago Daphne • 0
0
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3
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1.8k
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Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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