Bioconductor Timecoursedata

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DESeq2 timecoursedata GeneExpression

updated 11 months ago by ATpoint ★ 4.8k • written 11 months ago by pangtaihin • 0

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761

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DESeq2 ImpulseDE2 timecour timecoursedata moanin

11 months ago Aurora • 0

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timecoursedata limma

19 months ago • updated 17 months ago triZZla • 0

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 20 months ago by ATpoint ★ 4.8k • written 20 months ago by Debebe • 0

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RNASeqData TimeCourse DESeq2 timecoursedata

updated 9 months ago by Michael Love 43k • written 21 months ago by georgii.vdovin • 0

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663

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timecoursedata edgeR

updated 2.1 years ago by Gordon Smyth 52k • written 2.1 years ago by boczniak767 ▴ 740

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937

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DESeq2 timecoursedata replicates

updated 2.1 years ago by Michael Love 43k • written 2.2 years ago by fepesanz8 • 0

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899

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.4 years ago by Michael Love 43k • written 2.5 years ago by arshad1292 • 0

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QTL fourier TimeSeriesExperiment timecoursedata

4.0 years ago Daphne • 0

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limma proteomics TMTlabeling timecoursedata

updated 4.5 years ago by SamGG ▴ 360 • written 4.5 years ago by maleknias • 0

10 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Awards • All

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k