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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
8 weeks ago Maria Doyle ▴ 90
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News: Bioconductor Carpentries instructor training
teaching Carpentries
2.1 years ago Maria Doyle ▴ 90
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News: Bioconductor teaching week
teaching Carpentries
written 2.3 years ago by 1.6k
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
2.3 years ago Andy Lynch ▴ 120
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Job: Bioconductor Community Manager
Community Teaching Bioconductor
2.5 years ago Matthew Ritchie ▴ 1000
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer job teaching bioconductor Job
6.1 years ago Laurent Gatto 1.6k
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EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 20
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 8.4 years ago by • 0 • written 8.4 years ago by ▴ 10
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News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 8.6 years ago by ▴ 10 • written 8.7 years ago by ★ 13k
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Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
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Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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