Showing : systemsbiology • reset
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
8 months ago info ▴ 10
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
19 months ago info ▴ 10
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3.6k
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
2.3 years ago Wuschel ▴ 10
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Job: Postdoctoral Researcher in the Computational Systems Pharmacology Research Group at University of Turku, Finland
systemsbiology network analysis drugvsdisease Job
8.7 years ago jing.tang • 0
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Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.8 years ago david.lynn • 0
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Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
9.6 years ago • updated 9.5 years ago heinrich.kovar ▴ 10
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Job: Postdoctoral Research Fellow in Bioinformatics - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
bioinformatician job rnaseq statistics systemsbiology Job
9.8 years ago Federico Marini ▴ 180
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Job: Post-Doctoral Research Fellow - Patient Genomics Data Visualization
visualization genomics personalized medicine systemsbiology js Job
9.8 years ago Hamid Bolouri ▴ 50
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Job: Research Associate (Postdoctoral) position at the MRC Cancer Unit, University of Cambridge, UK.
job computational biology genomics cancer systemsbiology Job
10.2 years ago Shamith.Samarajiwa ▴ 180
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Job: Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology bioinformatics position Job
10.3 years ago Thomas Girke ★ 1.7k
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RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
11.1 years ago Paul Shannon ▴ 750
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3
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1.6k
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Adding Illumina GEO GPL IDs to IlluminaIDMapping?
SystemsBiology lumi SystemsBiology lumi
updated 14.0 years ago by 21k • written 14.0 years ago by ★ 1.2k
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SPIA, hacked to run with only selected pathways
SystemsBiology Pathways Cancer SPIA SystemsBiology Pathways Cancer SPIA
15.2 years ago Tarca, Adi ▴ 570
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1.9k
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Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
17.3 years ago McGee, Monnie ▴ 300
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1.2k
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slow graph methods
SystemsBiology graph SystemsBiology graph
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by 25k
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1.1k
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biomaRt -> XML::addNode masks graph
SystemsBiology Cancer graph biomaRt SystemsBiology Cancer graph biomaRt
17.4 years ago Seth Falcon ★ 7.4k
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5
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1.5k
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limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 17.8 years ago by ★ 1.1k • written 17.8 years ago by 52k
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RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
18.7 years ago Seth Falcon ★ 7.4k
18 results • Page 1 of 1
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Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Answer: Unused arguments error without used arguments in GSVA? by jodan • 0
It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…
Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Votes
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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