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Comment: Sample-specific methylation values using QSEA
by
User3088
•
0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**'
```
result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
•
0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
•
0
![enter image description here][1]
[1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms.
I re…
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