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Showing :
subsetting
•
reset
1
vote
2
replies
2.2k
views
object of type 'externalptr' is not subsettable in R4.0 - with COM Object
r4.0
ComponentObjectModel
subsetting
2.5 years ago • updated 2.4 years ago
Duy Duc
• 0
0
votes
5
replies
4.1k
views
Grange object subsetting using seqnames
Seqnames
makeGRangesFromDataFrame
GRanges
Subsetting
GenomicRanges
3.8 years ago
rtrivedi1
▴ 10
0
votes
2
replies
1.6k
views
DataFrame matrix subsetting
DataFrame
subsetting
S4Vectors
updated 6.3 years ago by
Hervé Pagès
16k • written 6.3 years ago by
felix.ernst
• 0
4
votes
7
replies
5.9k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
TJ
• 0
1
vote
1
reply
1.2k
views
Subsetting GRanges objext
GRanges
subsetting
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
lalchungnungabt17
• 0
2
votes
5
replies
2.1k
views
rlog, lfcShrink and vst on gene subset
deseq2
subsetting
plot
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
giulia.pasquesi
▴ 10
1
vote
2
replies
1.7k
views
Subsetting GSE data with information from two different slots
GSE
subsetting
microarray
updated 7.5 years ago by
Axel Klenk
★ 1.1k • written 7.5 years ago by
A
▴ 60
3
votes
4
replies
7.0k
views
Subset GRanges object into new object
R
genomicranges
subsetting
7.5 years ago
jhanks1981
• 0
4
votes
3
replies
4.8k
views
subsetting GRanges object based on gene IDs
genomicranges
genomicfeatures
granges
subsetting
7.6 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
2.7k
views
Subsetting/subsequencing AAStringSet containing sequences of unequal length
biostrings
aastringset
subsetting
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
bri.isabella
• 0
0
votes
1
reply
1.4k
views
HTqPCR: bug in subsetting qPCRset
HTqPCR
htqpcr
subsetting
updated 8.3 years ago by
henrik.seidel
▴ 40 • written 8.4 years ago by
Guido Hooiveld
★ 4.1k
0
votes
0
replies
1.1k
views
Subsetting and Transforming
subsetting
gate
flowcore
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
smajor
• 0
1
vote
2
replies
1.2k
views
VariantAnnotation CollapsedVCF trouble
variantannotation
subsetting
8.6 years ago
Fabian Grammes
▴ 20
1
vote
2
replies
2.3k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
mdeea123
▴ 10
3
votes
7
replies
7.4k
views
edgeR subsetting DGEList by column/sample
edger
subsetting
dgelist
updated 8.8 years ago by
Gordon Smyth
52k • written 8.8 years ago by
mnaymik
▴ 10
4
votes
4
replies
2.1k
views
Limma Elist subsetting
microarray
limma
subsetting
8.9 years ago
arfranco
▴ 130
4
votes
2
replies
1.8k
views
drop levels in eSet pData
subsetting
eSet
9.1 years ago
Shamim Sarhadi
▴ 20
0
votes
1
reply
1.5k
views
Inconsistent Subseting using norm2Filter in FlowCore
flowcore
gate
subsetting
filter
updated 9.6 years ago by
Jiang, Mike
★ 1.3k • written 9.6 years ago by
peterfoster
▴ 20
3
votes
2
replies
1.7k
views
Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings
subsetting
View
dnastring
dnaseq
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
arado1
• 0
2
votes
1
reply
1.5k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.8 years ago by
laurent.jacob
▴ 10 • written 9.9 years ago by
Dario Strbenac
★ 1.6k
20 results • Page
1 of 1
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Replies
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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