Showing : stringdb • reset
4
votes
9
replies
1.1k
views
Get_interactions is giving the combined score
STRINGdb
updated 5 months ago by • 0 • written 5 months ago by ▴ 20
0
votes
3
replies
437
views
STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 6 months ago by ▴ 110 • written 6 months ago by • 0
1
vote
3
replies
524
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 6 months ago by ▴ 110 • written 6 months ago by • 0
0
votes
3
replies
664
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 7 months ago by ▴ 110 • written 7 months ago by • 0
0
votes
6
replies
1.7k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 9 months ago by • 0 • written 10 months ago by • 0
0
votes
2
replies
759
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
12 months ago Luca • 0
2
votes
5
replies
2.1k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 8 months ago by ▴ 110 • written 13 months ago by • 0
0
votes
1
reply
505
views
Specifying evidence channels in STRINGdb
STRINGdb stringdb
15 months ago robynne.braun • 0
0
votes
7
replies
1.7k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 16 months ago by ▴ 110 • written 16 months ago by • 0
0
votes
0
replies
826
views
Issues setting background in STRINGdb
STRINGdb MSstats
18 months ago samsiljee • 0
2
votes
2
replies
1.6k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
22 months ago Charlotte Soneson ▴ 170
2
votes
3
replies
1.2k
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
2.6 years ago AstrobioMike • 0
1
vote
2
replies
1.4k
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
2.8 years ago • updated 2.7 years ago Abhishek • 0
2
votes
4
replies
2.3k
views
STRINGdb string_db$map error
STRINGdb HELP
updated 23 months ago by ▴ 10 • written 2.8 years ago by ▴ 10
0
votes
6
replies
2.7k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
3.0 years ago • updated 2.9 years ago Wolfgang RAFFELSBERGER ▴ 140
2
votes
9
replies
2.7k
views
STRINGdb images very low quality?
STRINGdb
updated 3.0 years ago by ▴ 110 • written 3.1 years ago by ▴ 30
3
votes
4
replies
2.9k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb R
updated 3.0 years ago by ▴ 110 • written 3.2 years ago by ▴ 10
0
votes
3
replies
1.7k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 3.3 years ago by ▴ 110 • written 3.4 years ago by ▴ 140
0
votes
1
reply
1.0k
views
Error in mapping the gene names to the STRINGdb identifiers
PPI STRINGdb
updated 3.3 years ago by ▴ 110 • written 3.4 years ago by ▴ 10
0
votes
0
replies
1.1k
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R STRINGdb
3.5 years ago choijamts • 0
0
votes
1
reply
2.1k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
1
vote
1
reply
1.1k
views
How to find the source code of the package STRINGdb ?
STRINGdb Bioconductor
updated 3.8 years ago by 4.1k • written 3.8 years ago by ▴ 10
0
votes
1
reply
968
views
How can I download all supported species information table of STRINGdb V11
STRINGdb STRING
updated 4.1 years ago by 6.7k • written 4.1 years ago by • 0
0
votes
15
replies
3.1k
views
Is the STRINGdb server down?
STRINGdb R protein
updated 5.6 years ago by • 0 • written 5.8 years ago by • 0
2
votes
4
replies
1.8k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
5.6 years ago Moosa • 0
0
votes
2
replies
1.5k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
5.8 years ago Samuel Lee • 0
0
votes
1
reply
1.2k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
6.1 years ago wsciekly.maciek ▴ 10
0
votes
1
reply
1.0k
views
error with STRINGdb package to download the graph
stringdb R
6.5 years ago Salvo88 ▴ 20
0
votes
1
reply
1.3k
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 6.7 years ago by ▴ 110 • written 6.7 years ago by ▴ 20
0
votes
4
replies
1.6k
views
problem with get_link function
STRINGdb get_link bug
7.0 years ago cristinapasi • 0
0
votes
0
replies
1.2k
views
Problem with link generated with R using the string_db$get_link
stringdb
7.7 years ago Ilario De Toma ▴ 10
0
votes
3
replies
2.8k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb vignette
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by • 0
1
vote
2
replies
1.6k
views
string-db.org link not working in generated graphic
STRINGdb
8.1 years ago • updated 8.0 years ago florian.reisinger • 0
0
votes
1
reply
1.6k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb error
8.2 years ago Lluís Revilla Sancho ▴ 760
1
vote
2
replies
2.1k
views
How to export a STRINGDB network to XML
STRINGdb
updated 9.7 years ago by ▴ 10 • written 9.7 years ago by ▴ 160
35 results • Page 1 of 1
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Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0
After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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