Showing : stringdb • reset
4
votes
9
replies
1.2k
views
Get_interactions is giving the combined score
STRINGdb
updated 6 months ago by • 0 • written 6 months ago by ▴ 20
0
votes
3
replies
466
views
STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 7 months ago by ▴ 110 • written 7 months ago by • 0
1
vote
3
replies
551
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 7 months ago by ▴ 110 • written 7 months ago by • 0
0
votes
3
replies
757
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 8 months ago by ▴ 110 • written 8 months ago by • 0
0
votes
6
replies
1.8k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 10 months ago by • 0 • written 11 months ago by • 0
0
votes
2
replies
805
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
13 months ago Luca • 0
2
votes
5
replies
2.3k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 10 months ago by ▴ 110 • written 14 months ago by • 0
0
votes
1
reply
523
views
Specifying evidence channels in STRINGdb
STRINGdb stringdb
16 months ago robynne.braun • 0
0
votes
7
replies
1.7k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 17 months ago by ▴ 110 • written 17 months ago by • 0
0
votes
0
replies
876
views
Issues setting background in STRINGdb
STRINGdb MSstats
19 months ago samsiljee • 0
2
votes
2
replies
1.6k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
23 months ago Charlotte Soneson ▴ 170
2
votes
3
replies
1.2k
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
2.7 years ago AstrobioMike • 0
1
vote
2
replies
1.5k
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
2.9 years ago • updated 2.8 years ago Abhishek • 0
2
votes
4
replies
2.4k
views
STRINGdb string_db$map error
STRINGdb HELP
updated 24 months ago by ▴ 10 • written 2.9 years ago by ▴ 10
0
votes
6
replies
2.7k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
3.0 years ago Wolfgang RAFFELSBERGER ▴ 140
2
votes
9
replies
2.7k
views
STRINGdb images very low quality?
STRINGdb
updated 3.1 years ago by ▴ 110 • written 3.2 years ago by ▴ 30
3
votes
4
replies
2.9k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb R
updated 3.0 years ago by ▴ 110 • written 3.2 years ago by ▴ 10
0
votes
3
replies
1.7k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 3.4 years ago by ▴ 110 • written 3.4 years ago by ▴ 140
0
votes
1
reply
1.1k
views
Error in mapping the gene names to the STRINGdb identifiers
PPI STRINGdb
updated 3.4 years ago by ▴ 110 • written 3.5 years ago by ▴ 10
0
votes
0
replies
1.1k
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R STRINGdb
3.6 years ago choijamts • 0
0
votes
1
reply
2.2k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
1
vote
1
reply
1.1k
views
How to find the source code of the package STRINGdb ?
STRINGdb Bioconductor
updated 3.9 years ago by 4.1k • written 3.9 years ago by ▴ 10
0
votes
1
reply
981
views
How can I download all supported species information table of STRINGdb V11
STRINGdb STRING
updated 4.2 years ago by 6.7k • written 4.2 years ago by • 0
0
votes
15
replies
3.1k
views
Is the STRINGdb server down?
STRINGdb R protein
updated 5.7 years ago by • 0 • written 5.8 years ago by • 0
2
votes
4
replies
1.9k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
5.7 years ago Moosa • 0
0
votes
2
replies
1.6k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
5.8 years ago Samuel Lee • 0
0
votes
1
reply
1.2k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
6.2 years ago wsciekly.maciek ▴ 10
0
votes
1
reply
1.0k
views
error with STRINGdb package to download the graph
stringdb R
6.6 years ago Salvo88 ▴ 20
0
votes
1
reply
1.3k
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 6.8 years ago by ▴ 110 • written 6.8 years ago by ▴ 20
0
votes
4
replies
1.6k
views
problem with get_link function
STRINGdb get_link bug
7.1 years ago cristinapasi • 0
0
votes
0
replies
1.2k
views
Problem with link generated with R using the string_db$get_link
stringdb
7.7 years ago Ilario De Toma ▴ 10
0
votes
3
replies
2.8k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb vignette
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by • 0
1
vote
2
replies
1.6k
views
string-db.org link not working in generated graphic
STRINGdb
8.2 years ago • updated 8.1 years ago florian.reisinger • 0
0
votes
1
reply
1.6k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb error
8.3 years ago Lluís Revilla Sancho ▴ 760
1
vote
2
replies
2.1k
views
How to export a STRINGDB network to XML
STRINGdb
updated 9.8 years ago by ▴ 10 • written 9.8 years ago by ▴ 160
35 results • Page 1 of 1
Recent ...
Replies
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Awards • All
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to bastien_chassagnol • 0
Popular Question to Maria Doyle ▴ 100
Popular Question to Robert Ivanek ▴ 750
Locations • All
United States, 26 minutes ago
Canada, 32 minutes ago
France/Marseille/Inserm, 47 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 847 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6