Bioconductor Split

Showing : split • reset

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2.4k

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GenomicRanges split chromosome TxDb

updated 3.2 years ago by Hervé Pagès 16k • written 3.2 years ago by jon.klonowski ▴ 40

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1.3k

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flowStats newbie split subset flowCore

6.5 years ago yulia.chupalova • 0

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1.5k

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granges genomicranges split

written 7.8 years ago by gaiusjaugustus • 0

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1.6k

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iranges fasta split

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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r granges split performance

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by Jurat Shahidin ▴ 80

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8.3k

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granges split r

updated 3.2 years ago by jon.klonowski ▴ 40 • written 9.1 years ago by Jurat Shahidin ▴ 80

6 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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