Bioconductor Splicing

Showing : splicing • reset

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659

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splicing limma edgeR

updated 10 months ago by Gordon Smyth 52k • written 10 months ago by scoops_streams_06 • 0

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714

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transcriptome splicing assembly

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by Marianna ▴ 20

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1.1k

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splicing Exon featureCounts subread DEXSeq

2.7 years ago • updated 2.6 years ago NIK • 0

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880

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.3 years ago noahhelton98 ▴ 20

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3.0k

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edger normalization differential exon usage splicing

updated 4.3 years ago by Yunshun Chen ▴ 900 • written 4.3 years ago by oakhamwolf • 0

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1.4k

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DEXSeq Splicing Exon Usage

4.9 years ago gunjan.dikshit • 0

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1.3k

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ciri splicing splicesites

updated 5.0 years ago by lhddiallo • 0 • written 6.7 years ago by csijst • 0

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.1 years ago stuart ▴ 10

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1.8k

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genomicalignments splicing coverage

updated 5.3 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 6.0 years ago by Alejandro Reyes ★ 1.9k • written 6.0 years ago by rtunney2 • 0

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2.0k

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deseq2 splicing

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by yannickwurm • 0

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1.8k

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DRIMSeq splicing differential isoform usage

updated 8.0 years ago by Gosia Nowicka ▴ 90 • written 8.0 years ago by kristoffer.vittingseerup ▴ 20

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3.1k

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sgseq splicing alternative splicing

updated 8.9 years ago by Leonard Goldstein ▴ 260 • written 8.9 years ago by vakul.mohanty ▴ 20

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1.9k

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microarray splicing

updated 9.0 years ago by Sonika Tyagi ▴ 20 • written 10.2 years ago by gv ▴ 40

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1.6k

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DEXSeq splicing python SAM

9.3 years ago Fiona ▴ 70

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2.5k

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SGSeq analyzeFeatures Splicing

10.1 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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