Bioconductor Splicing

Showing : splicing • reset

votes

760

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splicing limma edgeR

updated 11 months ago by Gordon Smyth 52k • written 11 months ago by scoops_streams_06 • 0

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749

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transcriptome splicing assembly

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by Marianna ▴ 20

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1.2k

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splicing Exon featureCounts subread DEXSeq

2.8 years ago NIK • 0

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919

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.4 years ago noahhelton98 ▴ 20

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3.1k

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edger normalization differential exon usage splicing

updated 4.4 years ago by Yunshun Chen ▴ 900 • written 4.4 years ago by oakhamwolf • 0

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1.5k

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DEXSeq Splicing Exon Usage

5.1 years ago gunjan.dikshit • 0

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1.3k

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ciri splicing splicesites

updated 5.1 years ago by lhddiallo • 0 • written 6.8 years ago by csijst • 0

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1.1k

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junctionseq splicing RNAseq DEXSeq

5.3 years ago stuart ▴ 10

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1.8k

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genomicalignments splicing coverage

updated 5.4 years ago by Michael Lawrence ★ 11k • written 7.9 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 6.1 years ago by Alejandro Reyes ★ 1.9k • written 6.1 years ago by rtunney2 • 0

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2.1k

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deseq2 splicing

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by yannickwurm • 0

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1.8k

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DRIMSeq splicing differential isoform usage

updated 8.1 years ago by Gosia Nowicka ▴ 90 • written 8.1 years ago by kristoffer.vittingseerup ▴ 20

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3.2k

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sgseq splicing alternative splicing

updated 9.0 years ago by Leonard Goldstein ▴ 260 • written 9.0 years ago by vakul.mohanty ▴ 20

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2.0k

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microarray splicing

updated 9.1 years ago by Sonika Tyagi ▴ 20 • written 10.4 years ago by gv ▴ 40

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1.7k

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DEXSeq splicing python SAM

9.4 years ago Fiona ▴ 70

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2.5k

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SGSeq analyzeFeatures Splicing

10.2 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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