Bioconductor Splicing

Showing : splicing • reset

votes

674

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splicing limma edgeR

updated 10 months ago by Gordon Smyth 52k • written 10 months ago by scoops_streams_06 • 0

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722

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transcriptome splicing assembly

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by Marianna ▴ 20

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1.1k

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splicing Exon featureCounts subread DEXSeq

2.7 years ago NIK • 0

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889

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.3 years ago noahhelton98 ▴ 20

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3.0k

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edger normalization differential exon usage splicing

updated 4.3 years ago by Yunshun Chen ▴ 900 • written 4.3 years ago by oakhamwolf • 0

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1.4k

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DEXSeq Splicing Exon Usage

5.0 years ago gunjan.dikshit • 0

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1.3k

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ciri splicing splicesites

updated 5.0 years ago by lhddiallo • 0 • written 6.7 years ago by csijst • 0

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.2 years ago stuart ▴ 10

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1.8k

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genomicalignments splicing coverage

updated 5.3 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 6.0 years ago by Alejandro Reyes ★ 1.9k • written 6.0 years ago by rtunney2 • 0

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2.0k

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deseq2 splicing

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by yannickwurm • 0

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1.8k

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DRIMSeq splicing differential isoform usage

updated 8.0 years ago by Gosia Nowicka ▴ 90 • written 8.0 years ago by kristoffer.vittingseerup ▴ 20

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3.1k

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sgseq splicing alternative splicing

updated 8.9 years ago by Leonard Goldstein ▴ 260 • written 8.9 years ago by vakul.mohanty ▴ 20

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2.0k

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microarray splicing

updated 9.0 years ago by Sonika Tyagi ▴ 20 • written 10.3 years ago by gv ▴ 40

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1.7k

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DEXSeq splicing python SAM

9.3 years ago Fiona ▴ 70

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2.5k

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SGSeq analyzeFeatures Splicing

10.1 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Votes

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

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