Bioconductor Splicing

Showing : splicing • reset

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312

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splicing limma edgeR

updated 3 months ago by Gordon Smyth 51k • written 3 months ago by scoops_streams_06 • 0

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565

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transcriptome splicing assembly

updated 19 months ago by James W. MacDonald 66k • written 19 months ago by Marianna ▴ 20

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932

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splicing Exon featureCounts subread DEXSeq

2.1 years ago NIK • 0

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726

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.7 years ago noahhelton98 ▴ 20

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2.4k

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edger normalization differential exon usage splicing

updated 3.7 years ago by Yunshun Chen ▴ 860 • written 3.7 years ago by oakhamwolf • 0

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1.2k

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DEXSeq Splicing Exon Usage

4.4 years ago gunjan.dikshit • 0

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1.1k

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ciri splicing splicesites

updated 4.4 years ago by lhddiallo • 0 • written 6.1 years ago by csijst • 0

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851

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junctionseq splicing RNAseq DEXSeq

4.6 years ago stuart ▴ 10

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1.6k

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genomicalignments splicing coverage

updated 4.7 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by rasi1983 ▴ 10

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948

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dexseq splicing sqtl qtl

updated 5.4 years ago by Alejandro Reyes ★ 1.9k • written 5.4 years ago by rtunney2 • 0

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1.8k

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deseq2 splicing

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by yannickwurm • 0

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1.6k

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DRIMSeq splicing differential isoform usage

updated 7.4 years ago by Gosia Nowicka ▴ 90 • written 7.4 years ago by kristoffer.vittingseerup ▴ 20

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2.8k

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sgseq splicing alternative splicing

updated 8.3 years ago by Leonard Goldstein ▴ 220 • written 8.3 years ago by vakul.mohanty ▴ 20

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1.8k

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microarray splicing

updated 8.4 years ago by Sonika Tyagi ▴ 20 • written 9.7 years ago by gv ▴ 40

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1.5k

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DEXSeq splicing python SAM

8.7 years ago Fiona ▴ 70

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2.2k

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SGSeq analyzeFeatures Splicing

9.5 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

Votes

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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