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News:
Bioconductor 3.21 Release Schedule Important Deadlines Approaching
Software
Release
release
28 days ago
shepherl
4.1k
1
vote
0
replies
837
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
5 months ago
shepherl
4.1k
0
votes
11
replies
1.9k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
14 months ago • updated 6 months ago
shepherl
4.1k
3
votes
3
replies
1.7k
views
News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 6 months ago by
Gordon Smyth
52k • written 7 months ago by
shepherl
4.1k
0
votes
1
reply
1.3k
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
written 2.4 years ago by
Robert Castelo
★ 3.4k
4
votes
0
replies
1.1k
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
11 months ago
shepherl
4.1k
0
votes
1
reply
1.2k
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
13 months ago
shepherl
4.1k
5
votes
1
reply
1.5k
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 18 months ago by
shepherl
4.1k
2
votes
1
reply
2.0k
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq
microbiome
Software
updated 19 months ago by
ATpoint
★ 4.8k • written 19 months ago by
HULFRED
▴ 10
0
votes
0
replies
1.3k
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
19 months ago
shepherl
4.1k
0
votes
1
reply
671
views
Generate false reads for testing
mgu74bv2cdf
Software
Alignment
updated 22 months ago by
James W. MacDonald
68k • written 23 months ago by
Franck RICHARD
• 0
1
vote
8
replies
1.8k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.1 years ago by
shepherl
4.1k
0
votes
0
replies
1.0k
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
24 months ago
shepherl
4.1k
0
votes
0
replies
899
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
2.1 years ago
shepherl
4.1k
3
votes
6
replies
1.6k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 2.1 years ago by
darrelvanhoy
• 0 • written 2.1 years ago by
shepherl
4.1k
1
vote
0
replies
1.2k
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
2.5 years ago
shepherl
4.1k
0
votes
0
replies
1.0k
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
2.6 years ago
shepherl
4.1k
8
votes
0
replies
1.2k
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
3.0 years ago
shepherl
4.1k
0
votes
0
replies
873
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
3.1 years ago
shepherl
4.1k
0
votes
5
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
3.5 years ago • updated 3.0 years ago
shepherl
4.1k
8
votes
0
replies
1.3k
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
3.5 years ago
shepherl
4.1k
0
votes
0
replies
1.2k
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
3.6 years ago
Daniel
• 0
5
votes
0
replies
1.3k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
3.9 years ago
shepherl
4.1k
2
votes
2
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
4.4 years ago • updated 4.0 years ago
shepherl
4.1k
4
votes
0
replies
1.2k
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
4.5 years ago
shepherl
4.1k
1
vote
2
replies
1.7k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
4.5 years ago
shepherl
4.1k
0
votes
0
replies
1.4k
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
4.5 years ago
Vincent J. Carey, Jr.
6.7k
2
votes
4
replies
1.5k
views
Bioconductor package development
package
R
software
development
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
Dany
• 0
3
votes
0
replies
1.8k
views
News:
List of Deprecated Packages for Bioc3.12
annotation
software
experiment data
deprecated
News
4.6 years ago
shepherl
4.1k
0
votes
2
replies
1.1k
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 4.7 years ago by
shepherl
4.1k • written 4.7 years ago by
gnanaprakash.s
• 0
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages for Bioc3.12
deprecated
experiment data
software
annotation
News
4.9 years ago
shepherl
4.1k
0
votes
2
replies
1.1k
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation
software
TxDb
updated 4.9 years ago by
James W. MacDonald
68k • written 4.9 years ago by
AmalAbdel-Aziz
• 0
0
votes
3
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 5.0 years ago by
kayla.interdonato
▴ 160 • written 5.1 years ago by
shepherl
4.1k
4
votes
0
replies
1.0k
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
5.0 years ago
shepherl
4.1k
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.2 years ago
shepherl
4.1k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.3 years ago
shepherl
4.1k
1
vote
1
reply
1.4k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 5.4 years ago by
anamaria
▴ 10 • written 5.4 years ago by
jol.espinoz
▴ 40
0
votes
0
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.4 years ago
shepherl
4.1k
0
votes
2
replies
2.2k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
5.6 years ago • updated 5.4 years ago
shepherl
4.1k
2
votes
2
replies
1.3k
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
5.5 years ago
shepherl
4.1k
6
votes
0
replies
1.1k
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
5.5 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.6 years ago
shepherl
4.1k
2
votes
0
replies
2.6k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
5.6 years ago
Laurent Gatto
1.6k
0
votes
1
reply
1.3k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
5.7 years ago • updated 5.6 years ago
shepherl
4.1k
0
votes
0
replies
995
views
Job:
Software Developer - BC Cancer Research Center, Vancouver BC
software
bioinformatics
sequecing
Job
5.9 years ago
jmaanaki
• 0
0
votes
3
replies
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.9 years ago
shepherl
4.1k
0
votes
1
reply
1.1k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
6.0 years ago • updated 5.9 years ago
shepherl
4.1k
0
votes
1
reply
1.5k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
6.2 years ago
shepherl
4.1k
0
votes
1
reply
1.4k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
Jamal
• 0
0
votes
1
reply
1.4k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
6.3 years ago
shepherl
4.1k
50 results • Page
1 of 1
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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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