Showing : snpstats • reset
1
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.0 years ago Anastasiia • 0
0
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0
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865
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.6 years ago Amber • 0
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0
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731
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Coercion of a numeric matrix into a SnpMatrix
snpStats
4.8 years ago schandry • 0
0
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1
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1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.4 years ago GENOMIC_region • 0
1
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1
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1.4k
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reading ped error when using the snpStats library
snpstats ped file R
7.1 years ago kzelaya2 ▴ 10
0
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0
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1.2k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.7 years ago natalie.jean.mcdonald • 0
1
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0
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1.2k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
8.5 years ago carlos.ruiz • 0
1
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1
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1.8k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.0 years ago TimothéeFlutre ▴ 80
1
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2
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2.1k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.8 years ago remi.tournebize ▴ 10
0
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1
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1.4k
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snp analysis GWAS
snpstats
updated 10.0 years ago by ★ 13k • written 10.0 years ago by • 0
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0
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1.8k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.0 years ago vickygarfield87 • 0
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0
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1.1k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.1 years ago vickygarfield87 • 0
0
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1
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1.8k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.5 years ago by 6.7k • written 10.5 years ago by ★ 13k
0
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3
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1.8k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.8 years ago by 6.7k • written 10.8 years ago by ▴ 50
0
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1
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1.8k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.0 years ago David Winsemius ▴ 40
0
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0
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2.2k
views
Plink Data for Fst Calculations
snpStats snpStats
11.0 years ago Voke AO ▴ 760
0
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3
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1.3k
views
SNPstats package bug report
snpStats snpStats
11.0 years ago Guest User ★ 13k
0
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0
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2.0k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.1 years ago Stephanie M. Gogarten ▴ 870
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0
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1.2k
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snpStats Fst Implementation
snpStats snpStats
11.2 years ago Voke AO ▴ 760
0
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1
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1.5k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.7 years ago by 6.7k • written 11.7 years ago by ▴ 10
0
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1
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1.4k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 60
0
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0
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1.1k
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statistics from snpStats objects
SNP snpStats SNP snpStats
12.5 years ago james power ▴ 10
0
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3
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3.0k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.5 years ago by 6.7k • written 12.5 years ago by ▴ 20
0
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4
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1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 30
0
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2
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1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.1 years ago by 25k • written 13.1 years ago by ★ 4.2k
25 results • Page 1 of 1
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Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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