Showing : snpstats • reset
1
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.1 years ago Anastasiia • 0
0
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0
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887
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.8 years ago Amber • 0
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0
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757
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Coercion of a numeric matrix into a SnpMatrix
snpStats
4.9 years ago schandry • 0
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1
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1.1k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.5 years ago GENOMIC_region • 0
1
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1
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1.4k
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reading ped error when using the snpStats library
snpstats ped file R
7.2 years ago kzelaya2 ▴ 10
0
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0
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1.2k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.8 years ago natalie.jean.mcdonald • 0
1
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0
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1.3k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
8.6 years ago carlos.ruiz • 0
1
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1
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1.8k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.1 years ago TimothéeFlutre ▴ 80
1
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2
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2.1k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.9 years ago remi.tournebize ▴ 10
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1.4k
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snp analysis GWAS
snpstats
updated 10.1 years ago by ★ 13k • written 10.1 years ago by • 0
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1.9k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.2 years ago vickygarfield87 • 0
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1.2k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.2 years ago vickygarfield87 • 0
0
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1
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1.8k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.6 years ago by 6.7k • written 10.6 years ago by ★ 13k
0
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3
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1.9k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.0 years ago by 6.7k • written 10.9 years ago by ▴ 50
0
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1
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1.8k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.1 years ago David Winsemius ▴ 40
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2.2k
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Plink Data for Fst Calculations
snpStats snpStats
11.1 years ago Voke AO ▴ 760
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3
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1.3k
views
SNPstats package bug report
snpStats snpStats
11.1 years ago Guest User ★ 13k
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0
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2.0k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.3 years ago Stephanie M. Gogarten ▴ 890
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0
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1.2k
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snpStats Fst Implementation
snpStats snpStats
11.3 years ago Voke AO ▴ 760
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1
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1.6k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 10
0
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1
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1.4k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 60
0
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0
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1.2k
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statistics from snpStats objects
SNP snpStats SNP snpStats
12.6 years ago james power ▴ 10
0
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3
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3.1k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 20
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4
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1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 30
0
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2
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1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.2 years ago by 25k • written 13.2 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: PCA of different bacterial species by Jeremy • 0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0
`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …
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scater/scran with TPMs from Salmon - counts?
A: Full length single-cell RNA-seq - tximport output for downstream analysis
Answer: Understanding tximport working with salmon outputs
Answer: enrichGOgradient color change
How do I fix an odd voom plot in a combined dataset?
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