Showing : snpStats • reset
1
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.1 years ago Anastasiia • 0
0
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0
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885
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.8 years ago Amber • 0
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0
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755
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Coercion of a numeric matrix into a SnpMatrix
snpStats
4.9 years ago schandry • 0
0
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1
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1.1k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.5 years ago GENOMIC_region • 0
1
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1
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1.4k
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reading ped error when using the snpStats library
snpstats ped file R
7.2 years ago kzelaya2 ▴ 10
0
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0
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1.2k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.8 years ago natalie.jean.mcdonald • 0
1
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0
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1.3k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
8.6 years ago carlos.ruiz • 0
1
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1
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1.8k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.1 years ago TimothéeFlutre ▴ 80
1
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2
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2.1k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.9 years ago remi.tournebize ▴ 10
0
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1
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1.4k
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snp analysis GWAS
snpstats
updated 10.1 years ago by ★ 13k • written 10.1 years ago by • 0
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0
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1.9k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.1 years ago vickygarfield87 • 0
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1.2k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.2 years ago vickygarfield87 • 0
0
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1
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1.8k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.6 years ago by 6.7k • written 10.6 years ago by ★ 13k
0
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3
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1.8k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.9 years ago by 6.7k • written 10.9 years ago by ▴ 50
0
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1
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1.8k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.1 years ago David Winsemius ▴ 40
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0
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2.2k
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Plink Data for Fst Calculations
snpStats snpStats
11.1 years ago Voke AO ▴ 760
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3
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1.3k
views
SNPstats package bug report
snpStats snpStats
11.1 years ago Guest User ★ 13k
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0
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2.0k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.2 years ago Stephanie M. Gogarten ▴ 890
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0
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1.2k
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snpStats Fst Implementation
snpStats snpStats
11.3 years ago Voke AO ▴ 760
0
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1
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1.5k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 10
0
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1
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1.4k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 60
0
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0
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1.2k
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statistics from snpStats objects
SNP snpStats SNP snpStats
12.6 years ago james power ▴ 10
0
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3
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3.1k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 20
0
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4
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1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 30
0
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2
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1.6k
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Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.2 years ago by 25k • written 13.2 years ago by ★ 4.2k
25 results • Page 1 of 1
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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