Showing : snpStats • reset
1
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.2 years ago Anastasiia • 0
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0
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903
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.8 years ago Amber • 0
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0
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775
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Coercion of a numeric matrix into a SnpMatrix
snpStats
5.0 years ago schandry • 0
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1
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1.1k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.6 years ago GENOMIC_region • 0
1
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1
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1.4k
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reading ped error when using the snpStats library
snpstats ped file R
7.3 years ago kzelaya2 ▴ 10
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1.2k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.9 years ago natalie.jean.mcdonald • 0
1
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0
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1.3k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
8.7 years ago carlos.ruiz • 0
1
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1
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1.8k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.2 years ago TimothéeFlutre ▴ 80
1
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2
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2.1k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.0 years ago remi.tournebize ▴ 10
0
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1.4k
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snp analysis GWAS
snpstats
updated 10.2 years ago by ★ 13k • written 10.2 years ago by • 0
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1.9k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.2 years ago vickygarfield87 • 0
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1.2k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.2 years ago vickygarfield87 • 0
0
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1
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1.9k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.7 years ago by 6.7k • written 10.7 years ago by ★ 13k
0
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3
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1.9k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.0 years ago by 6.7k • written 11.0 years ago by ▴ 50
0
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1
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1.8k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.2 years ago David Winsemius ▴ 40
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2.2k
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Plink Data for Fst Calculations
snpStats snpStats
11.2 years ago Voke AO ▴ 760
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3
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1.3k
views
SNPstats package bug report
snpStats snpStats
11.2 years ago Guest User ★ 13k
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0
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2.0k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.3 years ago Stephanie M. Gogarten ▴ 890
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0
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1.3k
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snpStats Fst Implementation
snpStats snpStats
11.4 years ago Voke AO ▴ 760
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1
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1.6k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 10
0
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1
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1.4k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.1 years ago by 6.7k • written 12.1 years ago by ▴ 60
0
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0
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1.2k
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statistics from snpStats objects
SNP snpStats SNP snpStats
12.7 years ago james power ▴ 10
0
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3
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3.2k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.7 years ago by 6.7k • written 12.7 years ago by ▴ 20
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4
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1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by ▴ 30
0
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2
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1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.3 years ago by 25k • written 13.3 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Votes
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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