Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
seurat
•
reset
0
votes
3
replies
492
views
How to compare expression levels of genes between scRNAseq and bulkRNAseq?
Seurat
RNASeq
DESeq2
scRNAseq
updated 11 weeks ago by
jodan
• 0 • written 12 weeks ago by
Quang NN
▴ 10
0
votes
2
replies
955
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
updated 11 months ago by
Guido Hooiveld
★ 4.1k • written 11 months ago by
Sara
• 0
0
votes
5
replies
1.9k
views
scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
pseudobulk
seurat
DESeq2
updated 16 months ago by
Kevin Blighe
★ 4.0k • written 16 months ago by
daiane.hemerichbrennan
• 0
1
vote
2
replies
2.6k
views
trying to add SingleR label to Seurat Object fails
SingleR
Seurat
updated 17 months ago by
ATpoint
★ 4.8k • written 17 months ago by
Assa Yeroslaviz
★ 1.5k
0
votes
4
replies
4.7k
views
error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat
singleR
updated 22 months ago by
Marco
• 0 • written 5.4 years ago by
mathai.c
• 0
3
votes
1
reply
1.1k
views
'Seurat' package
singlecell
seurat
updated 23 months ago by
ATpoint
★ 4.8k • written 23 months ago by
Sooni
▴ 10
0
votes
2
replies
1.4k
views
ModuleExprScore function/ hdWGNCA
ModuleExprScore
DotPlot
hdWGNCA
Seurat
2.0 years ago
Yuko
• 0
0
votes
1
reply
4.4k
views
DESeq2 after Seurat analysis on integrated datasets
DESeq2
SingleCell
GeneExpression
Seurat
updated 2.2 years ago by
ATpoint
★ 4.8k • written 2.2 years ago by
bio.boi
• 0
1
vote
2
replies
1.3k
views
Error with FindConservedMarkers()
seurat
2.2 years ago
Chris
▴ 20
1
vote
0
replies
2.4k
views
Convert SpatialExperiment Object to Seurat Object
scuttle
scater
seurat
SpatialExperiment
2.2 years ago
cathalgking
▴ 10
2
votes
1
reply
2.3k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
NGS_enthusiast
• 0
0
votes
3
replies
2.0k
views
NA values for mitochondrial gene percentage
Seurat
scRNAseq
3.4 years ago
zahra.mesri95
• 0
1
vote
1
reply
1.7k
views
Seurat: normalized data in the integrated assay
seurat
updated 3.9 years ago by
Peter Hickey
▴ 750 • written 3.9 years ago by
zli1
• 0
5
votes
15
replies
17k
views
Can't able to install Seurat in Rstudio
Rstudio
Seurat
updated 3.9 years ago by
Kevin Blighe
★ 4.0k • written 3.9 years ago by
KOUSTAV
• 0
0
votes
0
replies
869
views
Using csClassify on a SeuratObject
scRNAseq
csClassify
Seurat
updated 3.9 years ago by
ATpoint
★ 4.8k • written 3.9 years ago by
curiousmind007
▴ 10
2
votes
2
replies
2.8k
views
Error when converting Seurat to SingleCellExperiment
Seurat
SingleCellExperiment
4.4 years ago
lirongrossmann
▴ 50
6
votes
3
replies
3.8k
views
Full length single-cell RNA-seq - tximport output for downstream analysis
tximport
Seurat
Smart-Seq
Smart-Seq2
updated 4.8 years ago by
Michael Love
43k • written 4.8 years ago by
lshepard
▴ 40
3
votes
6
replies
3.8k
views
Carry over variable features when converting FastMNN SCE object to Seurat object
mnn
batchelor
scrna-seq
seurat
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
heir_of_isildur88
• 0
5
votes
1
reply
2.1k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat
edgeR
spearman
correlation
scRNAseq
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
tobias-messmer
▴ 20
0
votes
2
replies
2.0k
views
PCA outliers cleaning
scRNAseq
Pipeline
Seurat
SingleCellExperiment
5.5 years ago
albadrs.93
▴ 10
0
votes
3
replies
2.3k
views
Error: no applicable method for `RunTSNE` applied to an object of class "try-error"
Seurat
scRNA
debugging
exceptions
unit-test
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
moldach
▴ 20
2
votes
2
replies
3.2k
views
DE analysis for 10X scRNA-seq data with multiple conditions and multiple replicates
scRNA-seq
Seurat
DE
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
ilee8
• 0
2
votes
4
replies
4.3k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 14 months ago by
Gordon Smyth
52k • written 5.7 years ago by
sambunga094
• 0
1
vote
3
replies
13k
views
Seurat 2.3.4 installation
seurat
updated 5.9 years ago by
Gordon Smyth
52k • written 5.9 years ago by
Mike
▴ 10
1
vote
1
reply
1.6k
views
gene counts in Seurat after RunCCA() and AlignSubspace()
scRNA-seq
seurat
CCA
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
Bogdan
▴ 670
0
votes
1
reply
3.1k
views
Deconvolution Method in Seurat and convert from SingleCellExperiment
scater
seurat
singlecellexperiment
rnaseq
updated 6.3 years ago by
Gordon Smyth
52k • written 6.4 years ago by
hamza_karakurt
▴ 60
0
votes
4
replies
3.4k
views
scRNA-seq: a question about the names of the columns in a Seurat object
scRNA-seq
SEURAT
updated 6.4 years ago by
Steve Lianoglou
★ 13k • written 6.4 years ago by
Bogdan
▴ 670
1
vote
5
replies
3.1k
views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
singlecellexperiment
single-cell
rnaseq
seurat
scater
6.5 years ago
hamza_karakurt
▴ 60
2
votes
2
replies
14k
views
Seurat/DESeq2 - single cell RNA-seq differential expression
seurat
deseq2
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
Clara
▴ 10
0
votes
1
reply
5.6k
views
Conversion to SingleCellExperiment from Seurat objects
Seurat
SingleCellExperiment
6.9 years ago
Wolfgang Huber
★ 13k
6
votes
2
replies
6.3k
views
Cell type specific cell markers for Seurat based analysis.
single cell
seurat
clustering
updated 7.8 years ago by
ankur.chakravarthy.10
▴ 40 • written 7.8 years ago by
Bioinformatician_R
▴ 20
31 results • Page
1 of 1
Recent ...
Replies
Comment: RNA Seq using Lrt
by
Rob
• 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R?
by
ben
• 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open!
by
Ali
• 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets
by
Gordon Smyth
52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install
by
Szabolcs
• 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Votes
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
Awards
• All
Scholar
to
Gordon Smyth
52k
Popular Question
to
shepherl
4.1k
Popular Question
to
Szabolcs
• 0
Popular Question
to
Mengjun
• 0
Popular Question
to
James W. MacDonald
68k
Locations
• All
Canada,
14 minutes ago
United States,
1 hour ago
United Kingdom,
1 hour ago
United States,
1 hour ago
The city by the bay,
2 hours ago
Traffic: 1018 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6