Bioconductor ScRNA-seq

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2.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.2 years ago by Aaron Lun ★ 28k • written 5.3 years ago by C T ▴ 140

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1.6k

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by vincent.croset ▴ 20

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3.5k

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cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq

updated 4.4 years ago by davide risso ▴ 980 • written 4.5 years ago by Wagaa ▴ 10

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832

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scRNA-seq time series

4.5 years ago Bogdan ▴ 670

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1.1k

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assayData() scRNA-seq single cell sequencing assayData Bioconductor

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by Wagaa ▴ 10

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3.4k

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mnn batchelor scrna-seq seurat

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by heir_of_isildur88 • 0

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6.6k

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scrna-seq downsampleBatches scran

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by p.joshi ▴ 40

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2.2k

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RNA-seq scRNA-seq

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Bogdan ▴ 670

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1.8k

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scrna-seq integration batch correction

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by p.joshi ▴ 40

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2.0k

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batchelor mnn scrna-seq

updated 2.4 years ago by Guandong Shang ▴ 40 • written 4.9 years ago by heir_of_isildur88 • 0

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902

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scRNA-seq

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Bogdan ▴ 670

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1.6k

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scRNA-seq MAST confounders

updated 4.9 years ago by Andrew_McDavid ▴ 270 • written 4.9 years ago by ramonmassoni ▴ 10

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1.1k

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scRNA-seq CNS transcriptomics RNAi Job

5.0 years ago Joseph Barry ▴ 10

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2.4k

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scRNA-Seq scater scran rna-seq MNN

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by hamza_karakurt ▴ 60

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3.0k

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scRNA-seq Seurat DE

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ilee8 • 0

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1.0k

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scran dropletUtils scater scRNA-Seq

5.5 years ago hamza_karakurt ▴ 60

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2.5k

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edger scRNA-seq DGEA

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by cronanz • 0

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3.0k

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10x scrna-seq

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by jma1991 ▴ 70

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3.0k

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scater scran scRNA-Seq doubletCells

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by hamza_karakurt ▴ 60

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2.1k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 5.7 years ago by Vladimir Kiselev ▴ 150 • written 5.7 years ago by hamza_karakurt ▴ 60

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1.7k

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scRNA-Seq clustering scater scran dunn index

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by hamza_karakurt ▴ 60

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7.0k

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deseq2 scRNA-Seq RNA-Seq differential expression analysis

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by hamza_karakurt ▴ 60

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1.8k

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scater scran igraph scRNA-Seq rots

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by hamza_karakurt ▴ 60

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2.0k

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R GSEA rna-seq scRna-Seq

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by hamza_karakurt ▴ 60

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4.6k

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scran scater Rtsne ggplot2 scRNA-Seq

updated 2.3 years ago by jamie.gearing ▴ 60 • written 5.8 years ago by hamza_karakurt ▴ 60

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2.8k

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scRNA-Seq RNA-Seq Clustering Silhouette Plot

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by hamza_karakurt ▴ 60

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1.7k

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scRNA-seq

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Bogdan ▴ 670

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1.5k

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scRNA-seq seurat CCA

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by Bogdan ▴ 670

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3.2k

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scRNA-seq SEURAT

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by Bogdan ▴ 670

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1.5k

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rnaseq scRNA-seq

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Bogdan ▴ 670

30 results • Page 1 of 1

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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

Votes

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k