Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ruvnormalize
•
reset
0
votes
0
replies
122
views
determine k during RUVSeq
RUVSeq
RUVnormalize
6 weeks ago
Ειρήνη
• 0
1
vote
2
replies
950
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
14 months ago
AZ
▴ 30
0
votes
4
replies
2.3k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
2.0 years ago
Mohamed
▴ 30
0
votes
1
reply
647
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
5.7 years ago
losik
• 0
0
votes
2
replies
1.1k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.5 years ago by
Dario Strbenac
★ 1.5k • written 6.5 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.9 years ago by
davide risso
▴ 950 • written 6.9 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.4k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.9 years ago
Nik Tuzov
▴ 80
2
votes
1
reply
1.3k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 7.0 years ago by
davide risso
▴ 950 • written 7.0 years ago by
manish20072013
• 0
2
votes
1
reply
1.6k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.0 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.5k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.2 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.3k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.6 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.3k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 9.0 years ago by
laurent.jacob
▴ 10 • written 9.1 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.3k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.0 years ago by
laurent.jacob
▴ 10 • written 9.1 years ago by
Dario Strbenac
★ 1.5k
13 results • Page
1 of 1
Recent ...
Replies
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results
by
Michael Love
42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Awards
• All
Popular Question
to
ATpoint
★ 4.2k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Gordon Smyth
51k
Voter
to
Chris
▴ 20
Popular Question
to
Jitendra
▴ 10
Locations
• All
United States,
just now
Germany,
2 minutes ago
United States,
3 minutes ago
Netherlands,
4 minutes ago
Sweden,
8 minutes ago
Traffic: 1388 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6