Showing : rnbeads • reset
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save.rnb.set warnings when trying to save rnb.set
RnBeads RnBeads.hg19 MethylationArray
written 8 months ago by • 0
0
votes
3
replies
1.5k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 22 months ago by ▴ 780 • written 22 months ago by ▴ 10
0
votes
0
replies
657
views
rnbeads inference
epigenetics RnBeads
2.2 years ago Jitendra ▴ 10
0
votes
0
replies
777
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
3.0 years ago Jitendra ▴ 10
0
votes
0
replies
972
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
0
votes
8
replies
2.4k
views
error in RnBeads installation
Epigenetics RnBeads R
3.1 years ago • updated 3.0 years ago Jitendra ▴ 10
1
vote
1
reply
1.2k
views
How to export methylation tracks in bed format
RnBeads
updated 4.1 years ago by 68k • written 4.1 years ago by ▴ 10
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0
replies
1.2k
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How to know the number of detected CpG islands with RnBeads
RnBeads
4.1 years ago Federica ▴ 10
0
votes
0
replies
1.4k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.1 years ago D ▴ 10
1
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2
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2.5k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 4.1 years ago by ▴ 10
2
votes
4
replies
1.6k
views
How to launch the RnBeads Data Juggler?
RnBeads
4.1 years ago Federica ▴ 10
2
votes
9
replies
2.4k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 3.4 years ago by • 0 • written 4.4 years ago by • 0
2
votes
6
replies
1.7k
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 3 months ago by • 0 • written 4.8 years ago by ▴ 10
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0
replies
1.0k
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
5.0 years ago caoy4g4 • 0
0
votes
2
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2.3k
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RnBeads set ghost script environment variable
RnBeads ghostscript
5.4 years ago Kathrin.Klee • 0
1
vote
3
replies
1.6k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 5.8 years ago by ▴ 50 • written 5.8 years ago by ★ 1.1k
0
votes
3
replies
1.4k
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 6.2 years ago by ▴ 50 • written 6.2 years ago by • 0
0
votes
1
reply
1.3k
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RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
6.9 years ago neuro3030 • 0
0
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1
reply
1.7k
views
RnBeads data preprocessing error
RnBeads
updated 7.0 years ago by • 0 • written 7.4 years ago by • 0
0
votes
0
replies
1.2k
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
7.1 years ago gabrielrfries • 0
1
vote
1
reply
1.8k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.4 years ago preethibagopi28 ▴ 10
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0
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1.3k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
7.6 years ago Theo ▴ 10
0
votes
2
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2.7k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 8.0 years ago by ★ 6.5k • written 8.0 years ago by ▴ 10
0
votes
0
replies
1.2k
views
'type = genes' for RnBeads::meth() function
rnbeads
8.2 years ago Tom ▴ 10
0
votes
0
replies
1.6k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
8.3 years ago Habil Zare ▴ 200
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0
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1.2k
views
RnBeads, enrichment analysis
rnbeads
8.4 years ago gaiusjaugustus • 0
0
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0
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1.8k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
8.6 years ago rasii • 0
4
votes
4
replies
3.6k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 9.0 years ago by 68k • written 9.1 years ago by ▴ 60
0
votes
2
replies
2.5k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 9.1 years ago by • 0 • written 9.6 years ago by • 0
0
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2
replies
1.5k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
9.2 years ago areyoujokingme • 0
0
votes
0
replies
2.5k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
9.3 years ago areyoujokingme • 0
2
votes
7
replies
2.4k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
9.3 years ago areyoujokingme • 0
0
votes
1
reply
1.7k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 9.4 years ago by • 0 • written 9.4 years ago by ▴ 120
0
votes
1
reply
1.4k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 9.4 years ago by • 0 • written 9.4 years ago by ▴ 40
0
votes
2
replies
2.1k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.4 years ago Brian Smith ▴ 120
1
vote
9
replies
2.6k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 9.4 years ago by • 0 • written 9.4 years ago by • 0
1
vote
1
reply
2.0k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 9.5 years ago by ▴ 10 • written 9.5 years ago by ▴ 120
0
votes
2
replies
2.0k
views
rnBeads error for the report path
software error rnbeads
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by • 0
0
votes
1
reply
2.0k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
9.6 years ago schasse • 0
0
votes
3
replies
3.4k
views
RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
9.7 years ago bmreilly • 0
2
votes
4
replies
2.8k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
9.7 years ago bmreilly • 0
41 results • Page 1 of 1
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Comment: Co-occurrence Network Analysis between Algae and Bacteria by solarsunyy • 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object by chillykean • 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
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