Showing : rnaseqgene • reset
0
votes
3
replies
614
views
RNA-seq with DESeq2 shrinkage estimation
Regression DESeq2 rnaseqGene
updated 7 months ago by 68k • written 8 months ago by • 0
3
votes
6
replies
989
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 8 months ago by • 0
0
votes
3
replies
686
views
Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
8 months ago gallantk5 • 0
0
votes
0
replies
490
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
9 months ago JG13 • 0
2
votes
2
replies
665
views
Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 10 months ago by ▴ 10 • written 10 months ago by • 0
1
vote
2
replies
595
views
Deseq2
DESeq2 rnaseqGene
updated 10 months ago by ▴ 220 • written 10 months ago by • 0
0
votes
1
reply
496
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 11 months ago by ★ 4.8k • written 11 months ago by • 0
2
votes
7
replies
1.4k
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
11 months ago • updated 10 months ago sajadahmad41454 • 0
0
votes
2
replies
662
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 12 months ago by 52k • written 12 months ago by • 0
3
votes
5
replies
1.3k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 13 months ago by 43k • written 13 months ago by ▴ 10
2
votes
1
reply
544
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 14 months ago by 43k • written 14 months ago by ▴ 20
5
votes
6
replies
1.2k
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
14 months ago Shaimaa Gamal • 0
1
vote
4
replies
934
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 17 months ago by 43k • written 17 months ago by ▴ 60
0
votes
2
replies
1.8k
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 21 months ago by 43k • written 21 months ago by • 0
1
vote
3
replies
1.2k
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 2.2 years ago by 43k • written 2.2 years ago by • 0
0
votes
3
replies
2.8k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
1
vote
2
replies
1.3k
views
toptable sort .by set
limma rnaseqGene
2.9 years ago snowmattin • 0
0
votes
1
reply
1.2k
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 3.2 years ago by ★ 4.8k • written 3.2 years ago by • 0
6
votes
10
replies
2.0k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 20
4
votes
1
reply
2.8k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 3.4 years ago by 43k • written 3.5 years ago by ▴ 10
2
votes
2
replies
1.1k
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
3.5 years ago • updated 22 months ago diangomaiga • 0
2
votes
2
replies
2.1k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
3.8 years ago SUMIT • 0
0
votes
0
replies
973
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
4.1 years ago Bogdan ▴ 670
1
vote
6
replies
1.8k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
4.2 years ago • updated 4.1 years ago Seaweed • 0
3
votes
3
replies
1.1k
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 40
1
vote
3
replies
1.0k
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 5.2 years ago by 43k • written 5.2 years ago by ★ 1.5k
0
votes
7
replies
3.5k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
2
replies
1.2k
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
6.1 years ago courtney.stairs • 0
1
vote
2
replies
1.5k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 6.2 years ago by 68k • written 6.2 years ago by ▴ 10
3
votes
5
replies
9.4k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 6.2 years ago by ★ 1.4k • written 6.2 years ago by • 0
1
vote
3
replies
1.6k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
6.3 years ago melkile26 • 0
2
votes
5
replies
2.0k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 7.0 years ago by 4.1k • written 7.0 years ago by • 0
0
votes
2
replies
1.6k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 7.1 years ago by ▴ 160 • written 7.1 years ago by • 0
0
votes
1
reply
2.0k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 8.8 years ago by ★ 6.8k • written 8.8 years ago by ▴ 20
0
votes
4
replies
2.1k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 8.8 years ago by • 0 • written 8.9 years ago by • 0
2
votes
5
replies
3.4k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
9.0 years ago cirisarri95 • 0
0
votes
1
reply
2.2k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 9.4 years ago by ★ 8.2k • written 9.4 years ago by • 0
0
votes
6
replies
4.3k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
9.5 years ago JunLVI ▴ 40
3
votes
2
replies
2.0k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
6
votes
8
replies
2.8k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 9.8 years ago by ★ 8.2k • written 9.8 years ago by • 0
0
votes
2
replies
3.4k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
0
votes
2
replies
6.2k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
10.0 years ago greg.mulhearn • 0
0
votes
3
replies
2.0k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
10.0 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.4k
views
Minor error in the RNASeqGene workflow
rnaseqgene
10.1 years ago snf ▴ 10
44 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
Awards • All
Popular Question to bd2000 ▴ 30
Popular Question to shepherl 4.1k
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to Gordon Smyth 52k
Locations • All
United States, 11 minutes ago
India, 11 minutes ago
India, 35 minutes ago
United States, 53 minutes ago
UPF, Barcelona, Spain, 2 hours ago
Traffic: 698 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6