Bioconductor Rna seq

Showing : rna seq • reset

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3.4k

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deseq2 mahattan plot RNA Seq

updated 4.3 years ago by bernatgel ▴ 150 • written 5.3 years ago by adeler001 • 0

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4.0k

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batch effect limma rna seq DE

updated 4.8 years ago by Steve Lianoglou ★ 13k • written 4.8 years ago by svlachavas ▴ 840

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1.0k

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RNA seq cpm

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by isabel.pieterse • 0

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1.2k

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sgseq alternative splicing rna seq

updated 6 months ago by Sara • 0 • written 5.2 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.2 years ago by James W. MacDonald 68k • written 5.2 years ago by abf ▴ 30

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676

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rna seq

5.2 years ago adeler001 • 0

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1.1k

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rna seq SGSeq Alternative splicing

updated 5.3 years ago by Leonard Goldstein ▴ 260 • written 5.3 years ago by 116100016 • 0

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695

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deseq2 likelihood ratio rna seq wald test

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by adeler001 • 0

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1.6k

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limma voom RNA Seq Time-course experiments

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by mahes.muniandy • 0

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1.3k

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RNA seq wgcna

updated 5.7 years ago by Peter Langfelder ★ 3.0k • written 5.7 years ago by agustin.gonvi ▴ 20

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2.4k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.8 years ago Mozart ▴ 30

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1.9k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.0 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180