Bioconductor Rna seq

Showing : rna seq • reset

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3.4k

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deseq2 mahattan plot RNA Seq

updated 4.3 years ago by bernatgel ▴ 150 • written 5.3 years ago by adeler001 • 0

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4.0k

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batch effect limma rna seq DE

updated 4.8 years ago by Steve Lianoglou ★ 13k • written 4.8 years ago by svlachavas ▴ 840

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978

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RNA seq cpm

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by isabel.pieterse • 0

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1.2k

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sgseq alternative splicing rna seq

updated 5 months ago by Sara • 0 • written 5.2 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.2 years ago by James W. MacDonald 67k • written 5.2 years ago by abf ▴ 30

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666

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rna seq

5.2 years ago adeler001 • 0

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1.0k

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rna seq SGSeq Alternative splicing

updated 5.3 years ago by Leonard Goldstein ▴ 260 • written 5.3 years ago by 116100016 • 0

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682

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deseq2 likelihood ratio rna seq wald test

updated 5.3 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.5k

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limma voom RNA Seq Time-course experiments

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by mahes.muniandy • 0

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1.3k

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RNA seq wgcna

updated 5.6 years ago by Peter Langfelder ★ 3.0k • written 5.6 years ago by agustin.gonvi ▴ 20

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2.3k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.7 years ago Mozart ▴ 30

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1.9k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.9 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

Recent ...

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Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Amora • 0

You did a great job giving an overview.....[slope][1] better than the bioconductor group! [1]: https://slopeio.org

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 750

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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