Bioconductor Rna seq

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3.7k

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deseq2 mahattan plot RNA Seq

updated 4.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by adeler001 • 0

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4.3k

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batch effect limma rna seq DE

updated 5.0 years ago by Steve Lianoglou ★ 13k • written 5.0 years ago by svlachavas ▴ 840

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1.2k

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RNA seq cpm

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by isabel.pieterse • 0

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1.3k

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sgseq alternative splicing rna seq

updated 8 months ago by Sara • 0 • written 5.4 years ago by 116100016 • 0

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1.2k

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edger RNA Seq

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by abf ▴ 30

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703

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rna seq

5.4 years ago adeler001 • 0

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1.1k

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rna seq SGSeq Alternative splicing

updated 5.5 years ago by Leonard Goldstein ▴ 260 • written 5.5 years ago by 116100016 • 0

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723

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deseq2 likelihood ratio rna seq wald test

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by adeler001 • 0

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1.6k

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limma voom RNA Seq Time-course experiments

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mahes.muniandy • 0

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1.4k

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RNA seq wgcna

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by agustin.gonvi ▴ 20

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rna seq trimmomatic trimming adapter trimming paired analysis

5.9 years ago Mozart ▴ 30

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2.0k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.1 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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