Bioconductor Rna seq

Showing : rna seq • reset

votes

replies

3.2k

views

deseq2 mahattan plot RNA Seq

updated 4.1 years ago by bernatgel ▴ 150 • written 5.1 years ago by adeler001 • 0

votes

replies

3.8k

views

batch effect limma rna seq DE

updated 4.6 years ago by Steve Lianoglou ★ 13k • written 4.6 years ago by svlachavas ▴ 830

votes

replies

887

views

RNA seq cpm

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by isabel.pieterse • 0

votes

replies

1.1k

views

sgseq alternative splicing rna seq

updated 3 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

vote

replies

1.1k

views

edger RNA Seq

updated 5.0 years ago by James W. MacDonald 67k • written 5.0 years ago by abf ▴ 30

votes

replies

634

views

rna seq

5.0 years ago adeler001 • 0

votes

replies

950

views

rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

votes

659

views

deseq2 likelihood ratio rna seq wald test

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by adeler001 • 0

votes

replies

1.1k

views

volcano plot rna seq

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by adeler001 • 0

vote

replies

1.5k

views

limma voom RNA Seq Time-course experiments

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mahes.muniandy • 0

votes

replies

1.2k

views

RNA seq wgcna

updated 5.4 years ago by Peter Langfelder ★ 3.0k • written 5.4 years ago by agustin.gonvi ▴ 20

vote

replies

2.2k

views

rna seq trimmomatic trimming adapter trimming paired analysis

5.5 years ago Mozart ▴ 30

votes

replies

1.8k

views

heatmap.2 hierarchical clustering microarray RNA seq DEG

6.7 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

Recent ...

Replies

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k