6 months ago
sukeshinik5
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20
2
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500
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17
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9
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7.5k
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James W. MacDonald
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written 8.9 years ago by
ompandey
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10
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4
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1.4k
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0
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2
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1.4k
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0
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5
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5.2k
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ATpoint
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written 4.0 years ago by
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0
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1
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1.0k
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Gordon Smyth
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written 5.1 years ago by
Sam
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3.3k
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2.1k
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Biologist
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120
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5
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6.7 years ago
Antonio Ahn
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150
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written 7.3 years ago by
muad.abdelhay
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written 7.6 years ago by
lirongrossmann
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80
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8
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10k
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updated 7.6 years ago by
Gordon Smyth
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written 10.7 years ago by
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550
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updated 7.9 years ago by
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written 7.9 years ago by
aina.jene
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8.4 years ago
Keifa
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9
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Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴
30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code:
[Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
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James W. MacDonald
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The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★
4.8k
> since there doesn't seem to be as much count variability,
No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
•
0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
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0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
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