Showing : combat sva • reset
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SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 3.1 years ago by • 0 • written 7.1 years ago by ▴ 10
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954
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.8 years ago jmsendoya • 0
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840
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Help with multiple batch effects
combat sva batch effect
6.0 years ago Fp • 0
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643
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Number of SVA increased after ComBat
combat sva
6.2 years ago jonellevillar • 0
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1.2k
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Combat prior plots good enough?
combat combat sva
6.7 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
6.9 years ago DataFanatic ▴ 10
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902
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SVA: Reference manual improvment
combat sva sva
7.1 years ago alice.anlind • 0
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1.2k
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What is the input for Combat in R?
combat sva input files
7.3 years ago arisarkar88 ▴ 40
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1.2k
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RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
7.3 years ago Ahdee ▴ 50
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2
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968
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Problem with Combat batch adjustment
combat sva
7.5 years ago vinnu260 ▴ 10
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1.6k
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is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 7.6 years ago by ▴ 110 • written 7.6 years ago by ▴ 10
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2.3k
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is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 7.6 years ago by ▴ 50 • written 7.6 years ago by ▴ 10
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SVA) Error while using 'sva' package - combat
combat sva
7.8 years ago kkwon • 0
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 7.8 years ago by ▴ 650 • written 7.8 years ago by ▴ 830
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2
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1.3k
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Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 7.8 years ago by ▴ 650 • written 7.8 years ago by ▴ 10
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4
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1.9k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.9 years ago DSP • 0
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SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
8.1 years ago John Townsend ▴ 20
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3
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3.2k
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SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 8.1 years ago by ▴ 850 • written 8.1 years ago by ▴ 20
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2.5k
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cross platform normalization in R
R Combat SVA
updated 8.4 years ago by ★ 13k • written 8.4 years ago by • 0
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Answer: Limma model.matrix design with batch effect and different life stages proportion by Masongeorge • 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
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Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
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"label" refers to my clusters, so there shouldn't be one. Both samples have cells in every cluster
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