Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
removeBatchEffect
•
reset
2
votes
2
replies
398
views
Batch adjustment for cohort based RNA seq data
RNASeqPower
removeBatchEffect
cpm
Batcheffect
4 months ago
sukeshinik5
▴ 20
17
votes
9
replies
7.2k
views
How to use removeBatchEffect for removing effect of multiple confounding variables
limma
removebatcheffect
deseq2
updated 4 months ago by
James W. MacDonald
67k • written 8.7 years ago by
ompandey
▴ 10
4
votes
4
replies
1.3k
views
Using both voom and removeBatchEffect, will they double adjust the data or is it the right way to perform this
limma
adjustment
voom
removeBatchEffect
covariates
7 months ago
sukeshinik5
▴ 20
0
votes
2
replies
1.3k
views
Remove batch effect between microarray data
Microarray
DifferentialExpression
limma
MicroarrayData
removebatcheffect
2.1 years ago
dqt
• 0
0
votes
5
replies
4.8k
views
How to remove batch effect from RNA-seq without count data?
RUVSeq
FPKM
removeBatchEffect
RNA-seq
sva
updated 3.1 years ago by
ATpoint
★ 4.6k • written 3.9 years ago by
Xiaojie Cheng
• 0
0
votes
1
reply
993
views
Should the design matrix for removeBatchEffect include an intercept?
removeBatchEffect
limma
updated 5.0 years ago by
Gordon Smyth
52k • written 5.0 years ago by
Sam
▴ 10
5
votes
7
replies
3.1k
views
logCPM to CPM conversion after removeBatchEffect()
edger
removeBatchEffect
cpm
logCPM
limma
5.7 years ago
altintas.ali
• 0
1
vote
6
replies
2.0k
views
edgeR removing batch effect before using expression data for clustering
edger
r
batcheffect
clustering
removeBatchEffect
updated 5.7 years ago by
James W. MacDonald
67k • written 5.7 years ago by
Biologist
▴ 120
2
votes
5
replies
4.7k
views
Batch Effect Correction
batch effect
removebatcheffect
edgeR
rld
DEseq2
6.5 years ago
Antonio Ahn
▴ 10
1
vote
1
reply
1.8k
views
Batch effect removal before SC3?
SC3
batch effect
removebatcheffect
updated 7.1 years ago by
Vladimir Kiselev
▴ 150 • written 7.2 years ago by
muad.abdelhay
▴ 10
11
votes
8
replies
12k
views
Limma and batch effect
limma
differential gene expression
clustering
removebatcheffect
updated 7.4 years ago by
Gordon Smyth
52k • written 7.4 years ago by
lirongrossmann
▴ 80
9
votes
8
replies
10k
views
removeBatchEffect options: design and covariates
limma
removebatcheffect
updated 7.4 years ago by
Gordon Smyth
52k • written 10.5 years ago by
Rao,Xiayu
▴ 550
0
votes
1
reply
2.7k
views
Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactly singular: U[4,4] = 0
sva
R
removebatcheffect
7.7 years ago
aina.jene
▴ 10
2
votes
2
replies
2.3k
views
SVA package - ERROR: nvobj = sva(edata, mod, mod0, n.sv=n.sv)
sva
removebatcheffect
R
updated 7.7 years ago by
sina.nassiri
▴ 130 • written 7.7 years ago by
aina.jene
▴ 10
1
vote
3
replies
1.5k
views
Re-use limma beta coefficients
limma
removebatcheffect
8.2 years ago
Keifa
▴ 10
3
votes
6
replies
2.9k
views
is it necessary to check batch effect in this case? and how to?
svaseq
combat sva
RANseq
batcheffect
removebatcheffect
updated 8.3 years ago by
Jakub
▴ 50 • written 8.3 years ago by
amoltej
▴ 10
0
votes
3
replies
1.6k
views
How to remove nested batch effects with removeBatchEffect?
edgeR
removeBatchEffect
nested design
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
Jenny Drnevich
★ 2.0k
4
votes
5
replies
3.0k
views
Removing unwanted variation (RUV) for paired analysis ?
ruvseq
edger
ruvg
removebatcheffect
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
g.atla
▴ 10
9
votes
10
replies
14k
views
Is the following a correct usage of Limma's removeBatchEffect() for clustered heat map generation?
limma
removeBatchEffect
heatmap
clustering
updated 9.1 years ago by
Bernd Klaus
▴ 610 • written 9.1 years ago by
Ekarl2
▴ 80
19 results • Page
1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
Awards
• All
Teacher
to
Axel Klenk
★ 1.1k
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Locations
• All
Bangladesh,
14 minutes ago
The city by the bay,
44 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
United Arab Emirates,
5 hours ago
United States,
6 hours ago
Traffic: 602 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6