Bioconductor Refseq

Showing : refseq • reset

votes

replies

1.0k

views

refseq Bioconductor conversion

4.3 years ago heiko_kin ▴ 60

votes

replies

747

views

RefSeq Chromosome Mutalyzer

5.0 years ago heiko_kin ▴ 60

votes

replies

2.5k

views

tximport Gene IDs txdb RefSeq Salmon

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by holmkn • 0

vote

replies

3.3k

views

edgeR ENEMBL RefSeq

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by mzillur • 0

votes

replies

2.9k

views

genomicfeatures maketxdbfromucsc refseq

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Sebastien Vigneau ▴ 10

votes

replies

4.2k

views

ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by gokcen.eraslan ▴ 10

votes

replies

3.3k

views

promoter granges refseq ucsc organismdb

updated 9.4 years ago by Robert Castelo ★ 3.4k • written 9.4 years ago by efoss ▴ 10

votes

4.1k

views

refseq annotationhub

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by dalloliogm ▴ 50

votes

replies

1.9k

views

customprodb dbsnp refseq varianttools

updated 9.7 years ago by xiaojing.wang ▴ 50 • written 9.7 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All