Showing : refseq • reset
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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq Bioconductor conversion
3.6 years ago heiko_kin ▴ 60
0
votes
0
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545
views
Conversion of RefSeq data to chromosomal position
RefSeq Chromosome Mutalyzer
4.2 years ago heiko_kin ▴ 60
0
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5
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2.0k
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Changing Gene ID annotation style - working with Salmon output [NM...] and resulting count files are numeric-only IDs
tximport Gene IDs txdb RefSeq Salmon
updated 4.4 years ago by 42k • written 4.4 years ago by • 0
1
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3
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2.9k
views
ENSEBL gene_ID in edgeR analysis
edgeR ENEMBL RefSeq
updated 5.3 years ago by 51k • written 5.3 years ago by • 0
6
votes
7
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2.6k
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makeTxDbFromUCSC fails to download refLink table
genomicfeatures maketxdbfromucsc refseq
updated 8.0 years ago by 16k • written 8.0 years ago by ▴ 10
8
votes
7
replies
3.6k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.4 years ago by 16k • written 8.5 years ago by ▴ 10
2
votes
2
replies
2.7k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter granges refseq ucsc organismdb
updated 8.6 years ago by ★ 3.3k • written 8.6 years ago by ▴ 10
4
votes
1
reply
3.8k
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getting the longest transcript by gene from Refseq
refseq annotationhub
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 50
2
votes
2
replies
1.7k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb dbsnp refseq varianttools
updated 9.0 years ago by ▴ 50 • written 9.0 years ago by • 0
9 results • Page 1 of 1
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Comment: How to get the DMR? by xuz • 0
These are from downstream association analysis result; The pipeline is only for data preprocessing and quality control. P values are associ…
Comment: Epicv2 conversion fail by Alex • 0
Thank you for your support. > In the double conversion, the output you supplied indicates that the number of probes is the same (453093)? …
Comment: OST to PST Converter Software by Deepak • 0
One can also check out a professional solution named Weeom OST to PST Converter Software. It is a reliable and secure solution to repair co…
Comment: How to search Pubmed Central or other fulltext literature base using regex? by Abiologist • 0
Apologies - you are potentially correct (assuming there is no answer within Bioconductor). I'm having trouble finding a suitable venue for …
Comment: How to search Pubmed Central or other fulltext literature base using regex? by ATpoint ★ 4.2k
This is off-topic as entirely unrelated to Bioconductor. You seem to be crossposting this to > 1 community, please at least leave a link to…
Votes
C: ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Help with error running DiffBind
Comment: Difference between enrichGO results and Enrichr website results
A: Unable to install the package "tissuesGeneExpression"
Unable to install the package "tissuesGeneExpression"
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