Bioconductor Rcy3

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igraph KEGGgraph RCy3 GraphNEL

10 weeks ago • updated 6 weeks ago Arindam ▴ 80

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RCy3

6 months ago Matthew Thornton ▴ 380

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433

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Cytoscape RCy3 RCy

updated 10 months ago by alex.pico ▴ 30 • written 11 months ago by David R ▴ 90

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Network RCy3

updated 10 months ago by alex.pico ▴ 30 • written 11 months ago by David R ▴ 90

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599

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RCy3 Cytohubba

updated 10 months ago by alex.pico ▴ 30 • written 11 months ago by jzhan067 ▴ 10

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Cytoscape RCy3 Networkvisualization WGCNA

18 months ago Ortega-C ▴ 10

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RCy3

updated 22 months ago by alex.pico ▴ 30 • written 22 months ago by adR ▴ 40

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GEOquery CancerData limma RCy3 CancerInSilico

updated 3.0 years ago by Steve Lianoglou ★ 13k • written 3.0 years ago by Caitlin ▴ 50

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rcy3

updated 3.9 years ago by alex.pico ▴ 30 • written 4.9 years ago by hanna226613 ▴ 10

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

4.0 years ago • updated 3.9 years ago Emilia ▴ 40

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891

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RCy3 Cytoscape R Newick Bioconductor

updated 3.9 years ago by alex.pico ▴ 30 • written 4.4 years ago by ellisjc • 0

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1.6k

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RCy3 Cytoscape Rgraphviz GOstats

5.5 years ago Matthew Thornton ▴ 380

12 results • Page 1 of 1

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Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

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Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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