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0
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1
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128
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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 22 days ago by 68k • written 24 days ago by • 0
6
votes
10
replies
2.6k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 8 weeks ago by ★ 4.6k • written 10 weeks ago by ▴ 10
0
votes
0
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218
views
[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
rMATS alternativesplicing maser R
4 months ago Anke • 0
1
vote
1
reply
467
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 5 months ago by 68k • written 5 months ago by • 0
2
votes
3
replies
644
views
DeSeq2 Model Problems with species, tissue, and tissue status nesting
DESeq2 R
written 6 months ago by • 0
3
votes
3
replies
15k
views
How to fix 'long vectors not supported yet' error in R
r
updated 10 months ago by • 0 • written 6.0 years ago by • 0
0
votes
0
replies
357
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
11 months ago danalvoronov ▴ 10
0
votes
4
replies
785
views
limma with interaction term
R biostatistics limma Epigenetics
12 months ago • updated 11 months ago Jitendra ▴ 10
0
votes
3
replies
2.1k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.9 years ago by • 0
1
vote
5
replies
2.5k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 10.0 years ago by ▴ 10
0
votes
7
replies
2.1k
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
written 14 months ago by • 0
0
votes
0
replies
504
views
multipollutant models
statistics Regression r limma
14 months ago Jitendra ▴ 10
3
votes
4
replies
1.0k
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
14 months ago pl23 • 0
1
vote
3
replies
2.1k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 14 months ago by ▴ 750 • written 3.8 years ago by • 0
0
votes
10
replies
1.4k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
14 months ago • updated 11 months ago ScafioRuo • 0
12
votes
10
replies
13k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 10 months ago by • 0 • written 15 months ago by ▴ 20
0
votes
2
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924
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq HTSeq R
18 months ago • updated 17 months ago yr542 • 0
1
vote
2
replies
1.0k
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
18 months ago Miguel • 0
2
votes
5
replies
1.8k
views
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R edgeR RNASeq
18 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
794
views
Gene enrichment analysis
analysis R GOfuncR
updated 19 months ago by ▴ 760 • written 20 months ago by • 0
0
votes
2
replies
1.6k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 20 months ago by • 0 • written 4.0 years ago by • 0
0
votes
1
reply
912
views
Subtype specific differential expression analysis
R limmaGUI edgeR limma regutools
updated 21 months ago by 52k • written 21 months ago by • 0
0
votes
1
reply
727
views
DEseq2 Single cell data paired design
R
updated 21 months ago by ▴ 30 • written 21 months ago by • 0
0
votes
4
replies
1.4k
views
Combine RNA-seq
BatchEffect R rnaseq
updated 21 months ago by ★ 1.4k • written 21 months ago by • 0
1
vote
3
replies
1.3k
views
tximport error
tximport r
updated 21 months ago by 43k • written 21 months ago by • 0
1
vote
2
replies
1.3k
views
Filter by expression and keep probes in limma
R filter limma Normalization Microarray
22 months ago Abdul ▴ 20
0
votes
0
replies
725
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
22 months ago aymanreffai • 0
1
vote
1
reply
2.3k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 22 months ago by ★ 4.1k • written 22 months ago by ▴ 10
0
votes
4
replies
1.3k
views
Unable to install BiocManager
Biocmanager R
updated 22 months ago by ▴ 50 • written 22 months ago by • 0
1
vote
1
reply
1.8k
views
Error in h5checktype(). H5Identifier not valid.
rhdf5 rhdf r
updated 22 months ago by • 0 • written 23 months ago by • 0
0
votes
13
replies
9.0k
views
KEGG enrichment in R and gene IDs
KEGG enrichKEGG R entrezid
22 months ago Laia ▴ 10
1
vote
3
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6.7k
views
Reduce the number of nodes appear in the cnetplot of clusterprofiler
cnetplot R clusterProfiler
updated 23 months ago by ★ 4.1k • written 24 months ago by ▴ 10
0
votes
1
reply
1.2k
views
scRNAseq package and cell type annotations
ExperimentHub R ExperimentHubData scRNAseq SingleR
updated 23 months ago by ▴ 750 • written 23 months ago by ▴ 10
0
votes
0
replies
710
views
rDGIdb package: score of the results
rDGIdb r
23 months ago HELEN • 0
2
votes
1
reply
720
views
add column with name in R
name R column
updated 23 months ago by ▴ 70 • written 23 months ago by • 0
0
votes
4
replies
1.4k
views
how to extract list in quantile in R
R quantile list
23 months ago sat • 0
0
votes
0
replies
950
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
23 months ago Manav • 0
0
votes
0
replies
799
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
23 months ago Jitendra ▴ 10
3
votes
2
replies
1.2k
views
how to extract and match information of two filein R
R column match
23 months ago sat • 0
0
votes
0
replies
759
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
23 months ago info ▴ 10
0
votes
17
replies
2.3k
views
How to check linear model
modalmatrix limma R linear
23 months ago Jitendra ▴ 10
0
votes
1
reply
1.0k
views
customised help function in argparse() in R
command-line R command-line-arguments argparse()
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
3
replies
1.6k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 10
1
vote
2
replies
1.2k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
24 months ago • updated 23 months ago abhisek001 • 0
0
votes
4
replies
1.4k
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
24 months ago Dr. • 0
0
votes
1
reply
1.4k
views
Extract Intersection Values from Venn
R Venn
updated 24 months ago by 68k • written 24 months ago by • 0
2
votes
6
replies
2.3k
views
DMRcate
DMRcate R DMRcatedata Markdown
24 months ago yr542 • 0
0
votes
0
replies
739
views
How to use MeDIPS with BEDPE format input?
R medip-seq MEDIPS
2.0 years ago Luomeng • 0
2
votes
9
replies
1.7k
views
mas5calls function doesn't work; mirna40cdf problem
R Bioconductor mas5calls
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
1
vote
2
replies
3.6k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 2.0 years ago by 52k • written 2.1 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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