Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
qsea
•
reset
0
votes
1
reply
337
views
QSEA:Error in h(simpleError(msg, call))
qsea
3 months ago
kf
• 0
1
vote
2
replies
377
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 7 months ago by
Researcher
▴ 10
0
votes
1
reply
404
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 9 months ago by
Simon Pearce
• 0 • written 10 months ago by
User3088
• 0
9
votes
18
replies
3.7k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 11 months ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
justinburgener
▴ 20
2
votes
1
reply
684
views
QSEA: normalisation >> sequencing preference
qsea
updated 22 months ago by
Matthias Lienhard
▴ 280 • written 22 months ago by
a.riediger
▴ 20
1
vote
1
reply
953
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 22 months ago by
Matthias Lienhard
▴ 280 • written 22 months ago by
a.riediger
▴ 20
1
vote
4
replies
1.5k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 2.2 years ago by
Simon Pearce
• 0 • written 2.3 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.0k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 2.4 years ago by
Simon Pearce
• 0 • written 2.4 years ago by
Marianna
▴ 20
3
votes
8
replies
1.7k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.5 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.0k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.6 years ago
rtrivedi1
▴ 10
0
votes
1
reply
813
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.6 years ago by
Matthias Lienhard
▴ 280 • written 3.8 years ago by
el466
• 0
1
vote
1
reply
1.2k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 4.0 years ago by
Matthias Lienhard
▴ 280 • written 4.0 years ago by
mbk0asis
• 0
0
votes
2
replies
945
views
Qsea - plotCoverage
Qsea
updated 4.7 years ago by
Matthias Lienhard
▴ 280 • written 4.7 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.2k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 4.8 years ago by
Matthias Lienhard
▴ 280 • written 4.8 years ago by
Simon Pearce
• 0
0
votes
1
reply
849
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 4.8 years ago by
Matthias Lienhard
▴ 280 • written 4.8 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.4k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 5.3 years ago by
Matthias Lienhard
▴ 280 • written 5.3 years ago by
LNathanson
• 0
0
votes
0
replies
1.2k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
6.2 years ago
saripalligautam86
▴ 10
0
votes
1
reply
987
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 6.5 years ago by
Matthias Lienhard
▴ 280 • written 6.6 years ago by
apt.university
• 0
0
votes
8
replies
1.8k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.6 years ago by
Matthias Lienhard
▴ 280 • written 6.6 years ago by
wildist
• 0
0
votes
3
replies
1.4k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 6.8 years ago by
Matthias Lienhard
▴ 280 • written 6.8 years ago by
geekyvt
• 0
1
vote
2
replies
1.2k
views
QSEA: Error while addLibraryFactors
QSEA
updated 6.8 years ago by
Matthias Lienhard
▴ 280 • written 6.8 years ago by
geekyvt
• 0
1
vote
3
replies
1.5k
views
QSEA Error while loading the bam files
qsea
updated 6.8 years ago by
Matthias Lienhard
▴ 280 • written 6.8 years ago by
geekyvt
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards
• All
Popular Question
to
Ali Barry
▴ 40
Popular Question
to
gabriel.hoffman
▴ 170
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
martin.grigorov
▴ 10
Scholar
to
James W. MacDonald
67k
Locations
• All
The city by the bay,
22 minutes ago
United Kingdom,
38 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
United States,
1 hour ago
UPF, Barcelona, Spain,
3 hours ago
Traffic: 417 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6