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qsea
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0
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replies
32
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
2 days ago
User3088
• 0
0
votes
1
reply
389
views
QSEA:Error in h(simpleError(msg, call))
qsea
4 months ago
kf
• 0
1
vote
2
replies
408
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 8 months ago by
Researcher
▴ 10
0
votes
2
replies
471
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
12 months ago • updated 2 days ago
User3088
• 0
9
votes
18
replies
3.8k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 13 months ago by
Matthias Lienhard
▴ 280 • written 7.8 years ago by
justinburgener
▴ 20
2
votes
1
reply
701
views
QSEA: normalisation >> sequencing preference
qsea
updated 23 months ago by
Matthias Lienhard
▴ 280 • written 23 months ago by
a.riediger
▴ 20
1
vote
1
reply
996
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 23 months ago by
Matthias Lienhard
▴ 280 • written 23 months ago by
a.riediger
▴ 20
1
vote
4
replies
1.5k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 2.4 years ago by
Simon Pearce
• 0 • written 2.4 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.1k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 2.5 years ago by
Simon Pearce
• 0 • written 2.5 years ago by
Marianna
▴ 20
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.6 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.1k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.7 years ago
rtrivedi1
▴ 10
0
votes
1
reply
832
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.7 years ago by
Matthias Lienhard
▴ 280 • written 3.9 years ago by
el466
• 0
1
vote
1
reply
1.2k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 4.1 years ago by
Matthias Lienhard
▴ 280 • written 4.1 years ago by
mbk0asis
• 0
0
votes
2
replies
960
views
Qsea - plotCoverage
Qsea
updated 4.8 years ago by
Matthias Lienhard
▴ 280 • written 4.8 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.3k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 4.9 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
Simon Pearce
• 0
0
votes
1
reply
865
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 4.9 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
1.8k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 21 days ago by
Lukas
▴ 20 • written 5.5 years ago by
LNathanson
• 0
0
votes
0
replies
1.2k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
6.3 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1000
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 6.6 years ago by
Matthias Lienhard
▴ 280 • written 6.7 years ago by
apt.university
• 0
0
votes
8
replies
1.9k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.7 years ago by
Matthias Lienhard
▴ 280 • written 6.8 years ago by
wildist
• 0
0
votes
3
replies
1.4k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 6.9 years ago by
Matthias Lienhard
▴ 280 • written 6.9 years ago by
geekyvt
• 0
1
vote
2
replies
1.2k
views
QSEA: Error while addLibraryFactors
QSEA
updated 7.0 years ago by
Matthias Lienhard
▴ 280 • written 7.0 years ago by
geekyvt
• 0
1
vote
3
replies
1.5k
views
QSEA Error while loading the bam files
qsea
updated 7.0 years ago by
Matthias Lienhard
▴ 280 • written 7.0 years ago by
geekyvt
• 0
23 results • Page
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Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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