Showing : output • reset
0
votes
2
replies
1.0k
views
Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output difference
2.8 years ago Jamie • 0
0
votes
3
replies
2.3k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 4.6 years ago by ▴ 300 • written 4.6 years ago by • 0
3
votes
6
replies
2.0k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 5.6 years ago by ▴ 890 • written 5.6 years ago by ▴ 10
0
votes
3
replies
1.6k
views
MEDIPS - Annotation output explanation
MEDIPS Output
7.0 years ago vjain • 0
2
votes
8
replies
4.8k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights output
updated 7.4 years ago by 52k • written 7.4 years ago by ▴ 60
1
vote
1
reply
2.1k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma voom edgeR toptable output
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 10
2
votes
9
replies
4.2k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
8.2 years ago Olorin ▴ 50
2
votes
2
replies
1.6k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit cytof write.csv output
updated 8.5 years ago by ▴ 30 • written 8.5 years ago by • 0
0
votes
5
replies
7.0k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 9.5 years ago by 43k • written 9.5 years ago by ▴ 10
9 results • Page 1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards • All
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Locations • All
The city by the bay, 56 minutes ago
Australia/Melbourne/Monash University Genomics and Bioinformatics Platform, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
United States, 3 hours ago
United States, 3 hours ago
Traffic: 888 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6