Bioconductor Output

Showing : output • reset

votes

replies

914

views

output difference

2.5 years ago Jamie • 0

votes

replies

2.1k

views

msa decipher output prettyPrint

updated 4.3 years ago by UBod ▴ 300 • written 4.3 years ago by matamunee • 0

votes

replies

1.8k

views

genesis output score

updated 5.2 years ago by Stephanie M. Gogarten ▴ 890 • written 5.2 years ago by lassana.a.samarakoon ▴ 10

votes

replies

1.5k

views

MEDIPS Output

6.7 years ago vjain • 0

votes

replies

4.6k

views

voomWithQualityWeights output

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by harelarik ▴ 60

vote

2.0k

views

limma voom edgeR toptable output

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by heikki.sarin ▴ 10

votes

replies

3.8k

views

msa alignement output sorted

7.9 years ago Olorin ▴ 50

votes

replies

1.5k

views

cytofkit cytof write.csv output

updated 8.2 years ago by chen_hao ▴ 30 • written 8.2 years ago by cjackson13 • 0

votes

replies

6.7k

views

deseq2 gene columns output

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by amyfm ▴ 10

9 results • Page 1 of 1

Recent ...

Replies

Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

Awards • All