Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
output
•
reset
0
votes
2
replies
770
views
Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
2.0 years ago
Jamie
• 0
0
votes
3
replies
1.8k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.8 years ago by
UBod
▴ 290 • written 3.8 years ago by
matamunee
• 0
3
votes
6
replies
1.5k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.7 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.3k
views
MEDIPS - Annotation output explanation
MEDIPS
Output
6.2 years ago
vjain
• 0
2
votes
8
replies
4.3k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.6 years ago by
Gordon Smyth
51k • written 6.6 years ago by
harelarik
▴ 60
1
vote
1
reply
1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
heikki.sarin
▴ 10
2
votes
9
replies
3.4k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
7.4 years ago
Olorin
▴ 50
2
votes
2
replies
1.4k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.7 years ago by
chen_hao
▴ 30 • written 7.7 years ago by
cjackson13
• 0
0
votes
5
replies
6.3k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.7 years ago by
Michael Love
42k • written 8.7 years ago by
amyfm
▴ 10
9 results • Page
1 of 1
Recent ...
Replies
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results
by
Michael Love
42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Awards
• All
Popular Question
to
ATpoint
★ 4.2k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Gordon Smyth
51k
Voter
to
Chris
▴ 20
Popular Question
to
Jitendra
▴ 10
Locations
• All
United States,
just now
Pakistan,
3 minutes ago
Israel,
7 minutes ago
China,
8 minutes ago
United Kingdom,
9 minutes ago
Traffic: 1398 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6