Bioconductor Output

Showing : output • reset

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981

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output difference

2.7 years ago Jamie • 0

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2.2k

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msa decipher output prettyPrint

updated 4.5 years ago by UBod ▴ 300 • written 4.5 years ago by matamunee • 0

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1.9k

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genesis output score

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.4 years ago by lassana.a.samarakoon ▴ 10

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1.6k

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MEDIPS Output

6.8 years ago vjain • 0

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4.7k

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voomWithQualityWeights output

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by harelarik ▴ 60

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2.1k

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limma voom edgeR toptable output

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by heikki.sarin ▴ 10

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4.0k

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msa alignement output sorted

8.1 years ago Olorin ▴ 50

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1.6k

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cytofkit cytof write.csv output

updated 8.3 years ago by chen_hao ▴ 30 • written 8.3 years ago by cjackson13 • 0

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6.8k

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deseq2 gene columns output

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by amyfm ▴ 10

9 results • Page 1 of 1

Recent ...

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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