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cytof
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733
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.4 years ago
achaillon
• 0
0
votes
0
replies
1.5k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
3.6 years ago
domenico.somma
• 0
1
vote
5
replies
1.1k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 3.7 years ago by
Michael Love
42k • written 3.7 years ago by
mikhael.manurung
▴ 280
0
votes
0
replies
644
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.2 years ago
mikhael.manurung
▴ 280
1
vote
6
replies
1.6k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
ghogg
• 0
2
votes
4
replies
941
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
mikhael.manurung
▴ 280
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.6 years ago by
chen_hao
▴ 30 • written 7.6 years ago by
cjackson13
• 0
1
vote
2
replies
2.8k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 8.8 years ago by
Jiang, Mike
★ 1.3k • written 8.8 years ago by
clevy
▴ 10
8 results • Page
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Answer: Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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toniafodakuta
• 0
Philly Sports Shirts offers an outstanding variety of Philadelphia sports apparel that caters to all fans. With their extensive range of t-…
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
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Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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