Showing : toptable • reset
0
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2
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811
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decideTests vs topTable results
decideTests topTable limma
updated 11 months ago by 51k • written 11 months ago by ▴ 20
0
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2
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732
views
Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 14 months ago by 51k • written 14 months ago by • 0
0
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1
reply
376
views
NAs in some genes in topTable output
limma topTable
updated 16 months ago by 51k • written 16 months ago by ▴ 10
0
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2
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999
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limma voom; fitted lines, factors that aren't of interest, and hypothesis testing
topTable voom contrasts
2.8 years ago James • 0
2
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4
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2.4k
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Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
limma toptable deg logfc
written 5.8 years ago by • 0
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.3 years ago snijesh ▴ 20
0
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5
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1.3k
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eBayes options and decideTests method
limma eBayes decideTests topTable
updated 4.3 years ago by 51k • written 4.3 years ago by • 0
0
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3
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1.4k
views
Subsetting a data frame generated by topTable() {limma}
limma toptable microarray
updated 4.7 years ago by 51k • written 4.7 years ago by ▴ 30
3
votes
6
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2.3k
views
Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix toptable makecontrasts differential gene expression
6.7 years ago stinehedensted • 0
1
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1
reply
1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma voom edgeR toptable output
updated 6.9 years ago by ★ 28k • written 6.9 years ago by ▴ 10
11
votes
5
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14k
views
Limma: how to get same output as topTable but for all the genes ?
limma toptable
updated 6.9 years ago by 51k • written 15.6 years ago by ▴ 190
1
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2
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1.3k
views
differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix
updated 6.9 years ago by ★ 7.9k • written 6.9 years ago by • 0
3
votes
3
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2.2k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 7.7 years ago by 51k • written 7.7 years ago by ▴ 80
14
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16
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2.7k
views
TopTable Problem : Unique Adj.P.Val which is near 1
limma toptable
8.0 years ago giroudpaul ▴ 40
8
votes
10
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4.9k
views
Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
limma topTable confidence interval effect size microarray
updated 8.3 years ago by 51k • written 8.3 years ago by ▴ 80
2
votes
2
replies
2.1k
views
Error while calling function topTable() from limma R package in microarray data analysis
limma microarray a4Core topTable statistical inference
updated 8.4 years ago by ★ 28k • written 8.4 years ago by ▴ 830
2
votes
4
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2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 20
10
votes
11
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7.8k
views
Standard error and effect size from Limma
effect size Limma toptable Standard Error
updated 8.9 years ago by 51k • written 8.9 years ago by ▴ 20
2
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4
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3.7k
views
report genes in intersection of Venn diagram with topTable?
rnaseq venn diagram limma toptable edgeR
updated 9.0 years ago by 51k • written 9.0 years ago by • 0
6
votes
7
replies
2.2k
views
what causes the difference in the topTable results by the two analyses using limma?
limma topTable
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 550
20 results • Page 1 of 1
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Replies
Answer: GESA with certain gene list returns no result with human genom, but many result by James W. MacDonald 66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help! by vohara4 • 0
"label" refers to my clusters, so there shouldn't be one. Both samples have cells in every cluster
Comment: Installing Bioconductor packages in Docker by Jon Bråte ▴ 250
How do you run your image after this? I need to specify a password...
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help! by ATpoint ★ 4.2k
What is the relationship between side and label?
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help! by vohara4 • 0
Thank you so much for your response. I've just tried adding Side to the summed object in both of the following manners, but I still get a "…
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Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
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