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omiccircos
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759
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Question about OmicCircos
OmicCircos
6.8 years ago
ch8316f5eyu
• 0
0
votes
0
replies
1.1k
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
7.4 years ago
mictadlo
▴ 10
0
votes
0
replies
1.1k
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
7.4 years ago
Didi
▴ 10
2
votes
3
replies
3.8k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 7.5 years ago by
yifangt
▴ 20 • written 10.1 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.5k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.7 years ago
matthew.bashton
• 0
0
votes
1
reply
1.8k
views
Circos Tile colors
OmicCircos
RCircos
updated 7.8 years ago by
bernatgel
▴ 150 • written 7.8 years ago by
Radek
▴ 90
0
votes
1
reply
2.6k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
7.9 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.2k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
8.0 years ago
theobroma22
▴ 10
0
votes
0
replies
1.4k
views
OmicCircos barplot height and scale
omiccircos
8.1 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
907
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
8.1 years ago
Didi
▴ 10
0
votes
0
replies
999
views
Zoom function in OmicCircos
OmicCircos
Zoom
8.1 years ago
abmora
• 0
0
votes
0
replies
914
views
How to plot a single segment using OmicCircos?
omiccircos
8.5 years ago
Shambho
• 0
1
vote
0
replies
895
views
the 23re and 24th segs cannot be plotted
OmicCircos
8.6 years ago
magcj89
▴ 10
3
votes
2
replies
2.8k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 8.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 8.9 years ago by
pertille
• 0
0
votes
0
replies
1.5k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
9.1 years ago
Gary
▴ 20
0
votes
0
replies
1.7k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
9.7 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.5k
views
News:
OmicCircos was updated
visualization
omiccircos
News
9.9 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.7k
views
OmicCircos mapping data file.
omiccircos
updated 9.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.3 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
1.9k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 9.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.3 years ago by
micahgearhart
• 0
0
votes
2
replies
2.2k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 9.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.9 years ago by
wei.shen
• 0
0
votes
1
reply
1.5k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
10.1 years ago
Peter.Wood
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: plyranges: find exact GRanges match keeping metadata columns
by
alexis.weinreb
• 0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
by
James W. MacDonald
67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
jodan
• 0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Answer: Unused arguments error without used arguments in GSVA?
by
jodan
• 0
It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…
Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals
by
Michael Love
43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Votes
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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