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na
•
reset
2
votes
1
reply
2.3k
views
Removing metadata rows containing NA values in GRanges
IRanges
GRanges
NA
updated 2.1 years ago by
ATpoint
★ 4.5k • written 2.1 years ago by
Timucin
• 0
0
votes
1
reply
1.6k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 3.0 years ago by
ATpoint
★ 4.5k • written 3.0 years ago by
Johan Largo
• 0
0
votes
1
reply
966
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 4.3 years ago by
Michael Stadler
▴ 350 • written 4.3 years ago by
jabbar_campbell
• 0
2
votes
5
replies
4.3k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma
mass spec
na
updated 5.7 years ago by
Gordon Smyth
51k • written 5.7 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.4k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 6.1 years ago by
altuna akalin
▴ 20 • written 6.1 years ago by
GFM
▴ 20
0
votes
8
replies
4.1k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 3 months ago by
Michael Love
42k • written 6.3 years ago by
t.kuilman
▴ 170
0
votes
1
reply
2.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.7 years ago by
Gordon Smyth
51k • written 6.7 years ago by
belmore
• 0
0
votes
0
replies
908
views
Inconsistent Missing Values When Importing GFF3
rtracklayer
NA
8.2 years ago
Dario Strbenac
★ 1.5k
2
votes
4
replies
1.3k
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 8.4 years ago by
Michael Love
42k • written 8.4 years ago by
NMostajo
▴ 10
0
votes
3
replies
4.8k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2
NA
cooksCutoff
updated 8.7 years ago by
Michael Love
42k • written 8.7 years ago by
colaneri
▴ 30
2
votes
1
reply
1.9k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools
lrr
baf
NA
updated 9.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.0 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
3
replies
1.6k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
9.0 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
1.7k
views
Plotting confidence intervals with NA values
graphics
confidence interval
NA
updated 9.1 years ago by
James W. MacDonald
67k • written 9.1 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
2
replies
2.0k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 9.3 years ago by
James W. MacDonald
67k • written 9.3 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.7k
views
missing values in data as input for parody package
parody
r
NA
9.7 years ago
upendrakumar.devisetty
• 0
1
vote
2
replies
2.1k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
9.8 years ago
remi.tournebize
▴ 10
3
votes
6
replies
2.4k
views
Possible bug in DEseq2 1.6.1 ?
deseq2
cook
NA
updated 10.1 years ago by
Michael Love
42k • written 10.1 years ago by
skiaphrene
▴ 10
12
votes
13
replies
8.4k
views
EdgeR Differential Expression analysis with NAs
EdgeR
rnaseq
NA
updated 10.2 years ago by
Aaron Lun
★ 28k • written 10.2 years ago by
elliott77
• 0
18 results • Page
1 of 1
Recent ...
Replies
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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