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IRanges GRanges NA

updated 2.4 years ago by ATpoint ★ 4.7k • written 2.4 years ago by Timucin • 0

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pvalue NA R DESeq2

updated 3.2 years ago by ATpoint ★ 4.7k • written 3.2 years ago by Johan Largo • 0

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qCount QuasR NA

updated 4.6 years ago by Michael Stadler ▴ 350 • written 4.6 years ago by jabbar_campbell • 0

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limma mass spec na

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by reubenmcgregor88 • 0

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methylkit normalizecoverage NA

updated 6.3 years ago by altuna akalin ▴ 20 • written 6.3 years ago by GFM ▴ 20

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deseq2 coldata NA

updated 6 months ago by Michael Love 43k • written 6.5 years ago by t.kuilman ▴ 170

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edger dgelist NA egsea

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by belmore • 0

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rtracklayer NA

8.4 years ago Dario Strbenac ★ 1.6k

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reportingtools deseq2 NA pvalue

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by NMostajo ▴ 10

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deseq2 NA cooksCutoff

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by colaneri ▴ 30

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gwastools lrr baf NA

updated 9.2 years ago by Stephanie M. Gogarten ▴ 890 • written 9.2 years ago by Vinicius Henrique da Silva ▴ 40

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rtracklayer NA BED getseq

9.3 years ago Dimitris Polychronopoulos ▴ 80

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graphics confidence interval NA

updated 9.4 years ago by James W. MacDonald 68k • written 9.4 years ago by Vinicius Henrique da Silva ▴ 40

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Gviz Plot NA graph Job

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Vinicius Henrique da Silva ▴ 40

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parody r NA

9.9 years ago upendrakumar.devisetty • 0

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snpStats BioConductor LD Linkage Disequilibrium NA

10.0 years ago remi.tournebize ▴ 10

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deseq2 cook NA

updated 10.3 years ago by Michael Love 43k • written 10.3 years ago by skiaphrene ▴ 10

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EdgeR rnaseq NA

updated 10.4 years ago by Aaron Lun ★ 28k • written 10.4 years ago by elliott77 • 0

18 results • Page 1 of 1

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Comment: How to formulate 2 factor nested design in DESeq2 by Mariane • 0

Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Thank you

Answer: Pathview visualisation not including positive log2 fold changes by James W. MacDonald 68k

Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…

Comment: Differential variance analysis - can i use deseq2 by Marwan • 0

Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…

Answer: Differential variance analysis - can i use deseq2 by Michael Love 43k

We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …

Votes

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

A: How to extract DESeq2 results for an interaction design

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?

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