Showing : mouse4302 • reset
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Guidance to handle .CEL file in R
R .cel fiels microarray mouse4302
6.7 years ago aacharya • 0
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mouse4302.db mapping discrepancies between as.list() and select()
r mouse4302 gene ontology
9.1 years ago mark614 • 0
3
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2
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1.7k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
0
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2
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1.8k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation mouse4302 annotate Annotation mouse4302 annotate
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 550
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4
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2.1k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 550
0
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1
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1.7k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 11.3 years ago by ▴ 1000 • written 11.3 years ago by ▴ 80
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1
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2.5k
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Limma makeContrasts - incorporating known confounder
mouse4302 limma mouse4302 limma
updated 11.3 years ago by ▴ 610 • written 11.3 years ago by ▴ 10
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3
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2.0k
views
error and warning message with blocked samples with Limma
GO Cancer mouse4302 limma GO Cancer mouse4302 limma
updated 12.0 years ago by 52k • written 12.0 years ago by ★ 2.0k
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2
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1.4k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 12.2 years ago by ▴ 540 • written 12.2 years ago by ▴ 110
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3
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2.7k
views
Filtering out duplicate probes in Affy data
Annotation mouse4302 annotate affy Annotation mouse4302 annotate affy
updated 12.2 years ago by 68k • written 12.3 years ago by ▴ 180
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3
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2.2k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 biomaRt mouse4302 biomaRt
updated 12.4 years ago by ▴ 10 • written 12.4 years ago by ★ 13k
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3
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1.5k
views
mouse4302.db and can't find gene symbol annotation
Annotation mouse4302 probe Annotation mouse4302 probe
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 350
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4
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1.7k
views
AffyID mapping question
Transcription mouse4302 Transcription mouse4302
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ★ 13k
0
votes
1
reply
3.9k
views
KEGG pathway heat map
mouse4302 limma mouse4302 limma
updated 12.9 years ago by ▴ 10 • written 12.9 years ago by ▴ 30
0
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1
reply
938
views
Biocore Data Team : package mouse4302.db bug
mouse4302 mouse4302
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 30
0
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1.1k
views
affymetrix annotation
Annotation mouse4302 affy Annotation mouse4302 affy
14.3 years ago arne.mueller@novartis.com ▴ 200
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6
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1.9k
views
affymetrix annotation
mouse4302 affy mouse4302 affy
updated 14.3 years ago by ▴ 250 • written 14.3 years ago by ▴ 200
0
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1
reply
918
views
question about CDF file
mouse4302 cdf mouse4302 cdf
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 10
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1
reply
1.1k
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 15.0 years ago by 68k • written 15.0 years ago by ★ 2.0k
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1
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1.3k
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 15.0 years ago by ▴ 610 • written 15.0 years ago by ▴ 190
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988
views
only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO mouse4302 cdf affy GO mouse4302 cdf affy
15.6 years ago Jarek Bryk ▴ 110
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3
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2.0k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 100
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3
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1.2k
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 170
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5
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2.7k
views
error in ls() unused arguments
mouse4302 affyPLM mouse4302 affyPLM
updated 16.2 years ago by ★ 2.3k • written 16.2 years ago by ▴ 40
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0
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935
views
[Fwd: Re: Duplicate probesets in mouse4302]
mouse4302 cdf mouse4302 cdf
16.2 years ago Naira Naouar ▴ 40
0
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2
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1.1k
views
Duplicate probesets in mouse4302
mouse4302 mouse4302
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ★ 1.3k
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1.5k
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Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 40
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963
views
gseattperm return all NA
mouse4302 Category mouse4302 Category
16.5 years ago Saroj Mohapatra ▴ 450
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1.0k
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Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
16.7 years ago Matyas Flemr ▴ 10
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2
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1.3k
views
namespace error with goProfiles package
GO mouse4302 goProfiles GO mouse4302 goProfiles
updated 16.8 years ago by ▴ 20 • written 16.8 years ago by ▴ 300
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4
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1.3k
views
mouse4302.db vs mouse 4302
Annotation Cancer mouse4302 Annotation Cancer mouse4302
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ★ 2.0k
0
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3
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1.2k
views
mouse4302,db_2.0.2 in AffylmGUI
Annotation Cancer mouse4302 affy limma Annotation Cancer mouse4302 affy limma
updated 17.0 years ago by ▴ 450 • written 17.0 years ago by ★ 2.0k
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5
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1.5k
views
Genefilter parameters for mouse 430 2
Cancer mouse4302 genefilter limma gcrma Cancer mouse4302 genefilter limma gcrma
updated 17.1 years ago by 68k • written 17.1 years ago by ★ 2.0k
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2
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1.1k
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annotation on mouse4302
Annotation mouse4302 Annotation mouse4302
updated 17.6 years ago by ▴ 500 • written 17.6 years ago by ▴ 510
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1.1k
views
mouse4302
Annotation mouse4302 probe affy Annotation mouse4302 probe affy
18.8 years ago Nianhua Li ▴ 870
0
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2
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882
views
Question about the appropriate uniververse for GOHyperG or hyperGtable
GO mouse4302 probe GO mouse4302 probe
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 300
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1
reply
1.1k
views
Annaffy problem loading metadata
mouse4302 annaffy mouse4302 annaffy
18.9 years ago Bornman, Daniel M ▴ 110
0
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3
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3.1k
views
AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
19.0 years ago Wu, Xiwei ▴ 350
0
votes
1
reply
992
views
Access to Affy chip annotation data in affylmGUI
mouse4302 affylmGUI mouse4302 affylmGUI
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 10
0
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2
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1.2k
views
moe430v2 annotation package?
Annotation GO mouse4302 cdf probe Annotation GO mouse4302 cdf probe
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 30
0
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6
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1.7k
views
can't instal MetaData package "mouse4302"
Annotation mouse4302 Annotation mouse4302
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by 52k
0
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3
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1.4k
views
latest devel GO package not built in R2.0.0
GO mouse4302 affy annaffy GO mouse4302 affy annaffy
updated 20.6 years ago by ★ 2.9k • written 20.6 years ago by ★ 1.4k
42 results • Page 1 of 1
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Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
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annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
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