Showing : annotationdata • reset
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Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 20 months ago by 66k • written 20 months ago by • 0
0
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2
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5.4k
views
Any tools to convert .gff to .gtf format
AnnotationData CrispRdesignR BSgenome
updated 21 months ago by ★ 1.6k • written 21 months ago by • 0
2
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10
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2.4k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 2.6 years ago by ★ 4.0k • written 2.6 years ago by • 0
3
votes
1
reply
2.2k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 2.7 years ago by 66k • written 2.7 years ago by • 0
2
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1
reply
1.5k
views
Retrieve gene description with ensembldb
biomaRt ensembldb AnnotationData
updated 3.1 years ago by ★ 2.0k • written 3.1 years ago by ▴ 510
4
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6
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1.2k
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 3.9 years ago by 66k • written 3.9 years ago by ▴ 10
2
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0
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1.0k
views
News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 5.1 years ago by • 0 • written 5.1 years ago by 3.9k
0
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0
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1.0k
views
News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
5.3 years ago shepherl 3.9k
1
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7
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1.1k
views
News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
5.6 years ago shepherl 3.9k
0
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0
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963
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News: ensembl 93 gtfs and fasta twobits have been added to AnnotationHub
annotationhub ensembl gtf 2bit annotationdata News
5.8 years ago shepherl 3.9k
2
votes
1
reply
1.0k
views
How to get chip information from annotation databases
bioconductor annotationdata hgu133a
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 260
0
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3
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1.6k
views
Which annotationData package should I use?
annotationdata Rosetta/Merck Human RSTA Custom Affymetrix 2.0 microarray
updated 6.6 years ago by 66k • written 6.6 years ago by • 0
0
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3
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1.7k
views
Question about the ChIPpeakAnno:
ChIPchip Annotation AnnotationData ChIPchip Annotation AnnotationData
updated 7.0 years ago by • 0 • written 10.1 years ago by ★ 4.3k
1
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1
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1.2k
views
select function not working with annotation package; bug?
annotation annotationdata illuminaMousev1p1.db
updated 7.3 years ago by 66k • written 7.3 years ago by ★ 4.0k
3
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2
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1.5k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 8.5 years ago by 66k • written 8.5 years ago by • 0
1
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1
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1.2k
views
ChIPpeakAnno: Invalid row.names length in peaksNearBDP
Annotation AnnotationData Annotation AnnotationData
updated 9.8 years ago by ★ 4.3k • written 9.8 years ago by ▴ 30
0
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1
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1.7k
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ChIPpeakAnno: Maxgap option in annotatePeakInBatch
Lung AnnotationData ChIPpeakAnno Lung AnnotationData ChIPpeakAnno
9.8 years ago Julie Zhu ★ 4.3k
0
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3
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1.5k
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TranscriptDb object to RangedData for ChIPpeakAnno
Annotation GO AnnotationData Organism BSgenome TranscriptDb convert BSgenome ChIPpeakAnno
10.9 years ago Alan Smith ▴ 150
0
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3
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1.8k
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Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
11.5 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.1k
views
Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
11.8 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.0k
views
ChIPpeakAnno
AnnotationData AnnotationData
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ★ 13k
0
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4
replies
2.2k
views
ChIPpeakAnno as.data.frame error
GO AnnotationData annotate convert ChIPpeakAnno GO AnnotationData annotate convert
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 910
0
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3
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1.1k
views
[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
AnnotationData AnnotationData
updated 12.6 years ago by ▴ 50 • written 12.6 years ago by ★ 4.3k
0
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0
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945
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[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
AnnotationData AnnotationData
12.6 years ago Halian Vilela ▴ 50
0
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1
reply
1.9k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ▴ 100
0
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0
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1.2k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
13.1 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.1k
views
[ENQUIRY] chIPpeakAnno annotatePeakInBatch
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
13.2 years ago Julie Zhu ★ 4.3k
0
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0
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1.1k
views
Call for help about your Chippeakanno R package
Annotation Cancer AnnotationData ChIPpeakAnno Annotation Cancer AnnotationData ChIPpeakAnno
13.3 years ago Julie Zhu ★ 4.3k
0
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0
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1.1k
views
Gene Name annotation with ChIPpeakAnno
Annotation AnnotationData annotate convert biomaRt Annotation AnnotationData annotate
13.4 years ago Julie Zhu ★ 4.3k
0
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0
replies
996
views
ChIPpeakAnno bug?
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
13.6 years ago Julie Zhu ★ 4.3k
0
votes
7
replies
1.4k
views
ChIPpeakAnno annotatePeakInBatch error message
GO AnnotationData GO AnnotationData
14.0 years ago Dario Strbenac ★ 1.5k
0
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3
replies
1.2k
views
ChIPpeakAnno Critical Bug
AnnotationData AnnotationData
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ★ 1.5k
0
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0
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926
views
Chippeakanno, maxgap =1000
AnnotationData AnnotationData
14.1 years ago Julie Zhu ★ 4.3k
0
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0
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1.1k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
14.5 years ago Khademul Islam ▴ 30
0
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1
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1.5k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 30
35 results • Page 1 of 1
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Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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