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Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
My guess is that `Side` did not make it into the summed object. You aggregate the SCE to summed with label and SampleName. How would the fu…
Comment: Behaviour of featureCounts when quantifying multi-mapping reads
by
Rachael
• 0
Thank you so much for your help!
Comment: EnhancedVolcano results in an empty plot
by
Patadù
▴ 10
Hi James, I do not know if it might be of interest for you, but in the end I could plot the Volcano plot. I did have to use the `lfcShrink(…
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
by
Yang Liao
▴ 420
Both `v1.5.0` and `v1.6.4` versions are very old. I suggest upgrading to `v2.0.6` (the latest version). There was a change regarding the `…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
Sounds good. Thanks again!
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Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
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