Bioconductor Mouse

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142

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annotation SingleR mouse SingleCellData scRNAseq

9 weeks ago Muhammad • 0

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823

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TFutils mouse gene convert

3.9 years ago nicocillari • 0

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2.0k

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RNAseq Affymetrix Mouse

updated 4.5 years ago by Guido Hooiveld ★ 4.1k • written 4.5 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.4 years ago dmgatti ▴ 10

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1.4k

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deseq2 mouse rnaseq

7.4 years ago Emilie • 0

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2.1k

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Annotation mouse UNIPROT

updated 7.6 years ago by Mike Smith ★ 6.6k • written 7.6 years ago by julie.chevalier • 0

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8.0k

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human mouse ensembl annotationdbi homologue

7.9 years ago Keith Hughitt ▴ 180

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1.5k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 8.7 years ago by Andy Lynch ▴ 120 • written 8.7 years ago by smt8n • 0

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1.3k

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biomart ensembl release82 variation mouse News

9.6 years ago Thomas Maurel ▴ 800

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human mouse GRCh38 biomart Ensembl News

updated 9.8 years ago by Sonali Arora ▴ 390 • written 9.8 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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