Showing : missMethyl • reset
0
votes
0
replies
166
views
gsameth GSA: probe annotation to multiple genes
missMethyl gsameth
3 months ago nurkenber • 0
0
votes
1
reply
320
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl DMRcate
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
2
replies
398
views
MissMethyl failed to use gometh function for EPICv2
missMethyl EPICv2manifest
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
2
replies
768
views
DMPs enrichment for MOUSE DNA methylation array
minfi mCSEA missme missMethyl
updated 8 months ago by • 0 • written 8 months ago by • 0
1
vote
3
replies
1.9k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
14 months ago • updated 7 months ago s.malik • 0
0
votes
1
reply
917
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 20 months ago by ▴ 230 • written 20 months ago by • 0
0
votes
2
replies
910
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 13 months ago by • 0 • written 23 months ago by • 0
1
vote
1
reply
888
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 24 months ago by ▴ 40 • written 24 months ago by • 0
0
votes
1
reply
802
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
2.0 years ago Grace • 0
0
votes
0
replies
553
views
goMeth
missMethyl
2.1 years ago anmolanp ▴ 10
2
votes
6
replies
1.5k
views
No enriched GO terms CpGs
DNAMethylation missMethyl
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
2
votes
3
replies
1.8k
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 2.3 years ago by ▴ 40 • written 2.3 years ago by • 0
0
votes
6
replies
1.7k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.8 years ago by ▴ 20 • written 4.8 years ago by ▴ 10
0
votes
1
reply
1.2k
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 3.8 years ago by ▴ 20 • written 4.7 years ago by ▴ 10
1
vote
2
replies
2.3k
views
Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 20
0
votes
0
replies
1.2k
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
6.7 years ago peter.fransquet • 0
0
votes
0
replies
1.1k
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
6.8 years ago owen.whitley ▴ 10
0
votes
1
reply
1.7k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 6.9 years ago by ▴ 50 • written 7.9 years ago by ▴ 190
0
votes
0
replies
1.2k
views
which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
7.0 years ago RC • 0
0
votes
0
replies
1.2k
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
7.0 years ago Taub, Margaret ▴ 10
0
votes
2
replies
1.7k
views
prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 7.8 years ago by 52k • written 8.0 years ago by ★ 2.0k
0
votes
3
replies
1.5k
views
Details of gene names in DE
missmethyl
updated 8.1 years ago by 68k • written 8.1 years ago by • 0
0
votes
1
reply
1.5k
views
missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 8.2 years ago by ▴ 40 • written 8.2 years ago by • 0
1
vote
2
replies
1.8k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
1
vote
3
replies
3.5k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
9.1 years ago philipp24 ▴ 30
3
votes
3
replies
4.1k
views
missMethyl: Gene ontology analysis
missMethyl
9.1 years ago philipp24 ▴ 30
0
votes
0
replies
1.4k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
9.1 years ago philipp24 ▴ 30
27 results • Page 1 of 1
Recent ...
Replies
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
Awards • All
Popular Question to s.malik • 0
Popular Question to shepherl 4.1k
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to etiennedanis • 0
Popular Question to javier.ruizramirez • 0
Locations • All
India, 2 minutes ago
United States, 5 minutes ago
Rijnsburg, 6 minutes ago
915 North Ohio Ave Fremont, Ohio 43420, 23 minutes ago
United States, 57 minutes ago
Traffic: 913 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6