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missMethyl
•
reset
0
votes
0
replies
100
views
gsameth GSA: probe annotation to multiple genes
missMethyl
gsameth
24 days ago • updated 23 days ago
nurkenber
• 0
0
votes
1
reply
126
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl
DMRcate
updated 4 weeks ago by
James W. MacDonald
68k • written 4 weeks ago by
maximuscfyeung
• 0
0
votes
2
replies
294
views
MissMethyl failed to use gometh function for EPICv2
missMethyl
EPICv2manifest
updated 4 weeks ago by
James W. MacDonald
68k • written 4 weeks ago by
maximuscfyeung
• 0
0
votes
2
replies
584
views
DMPs enrichment for MOUSE DNA methylation array
minfi
mCSEA
missme
missMethyl
updated 5 months ago by
nrenke
• 0 • written 5 months ago by
Lucie
• 0
1
vote
3
replies
1.6k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
11 months ago • updated 4 months ago
s.malik
• 0
0
votes
1
reply
825
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 18 months ago by
Tim Peters
▴ 200 • written 18 months ago by
b.curran
• 0
0
votes
2
replies
853
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 10 months ago by
CHEN
• 0 • written 21 months ago by
Saanchi
• 0
1
vote
1
reply
817
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis
topGO
missMethyl
MethylationArrayData
MethylationArray
updated 21 months ago by
belinda.phipson
▴ 40 • written 21 months ago by
Grace
• 0
0
votes
1
reply
732
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
21 months ago
Grace
• 0
0
votes
0
replies
534
views
goMeth
missMethyl
23 months ago
anmolanp
▴ 10
2
votes
6
replies
1.3k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 23 months ago by
belinda.phipson
▴ 40 • written 23 months ago by
Joana
• 0
2
votes
3
replies
1.5k
views
GSEA for paired methylation data
missMethyl
GSEA
minfi
methylGSA
updated 2.1 years ago by
belinda.phipson
▴ 40 • written 2.1 years ago by
Lukas
• 0
0
votes
6
replies
1.6k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 3.6 years ago by
Jovana Maksimovic
▴ 20 • written 4.6 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.1k
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 3.6 years ago by
Jovana Maksimovic
▴ 20 • written 4.4 years ago by
stewart999
▴ 10
1
vote
2
replies
2.3k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
moldach
▴ 20
0
votes
0
replies
1.1k
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
6.5 years ago
peter.fransquet
• 0
0
votes
0
replies
1.1k
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl
gsameth
6.6 years ago
owen.whitley
▴ 10
0
votes
1
reply
1.6k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl
diffvar
design matrix
limma
block
updated 6.7 years ago by
lhuang7
▴ 50 • written 7.6 years ago by
Simone
▴ 190
0
votes
0
replies
1.1k
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.8 years ago
RC
• 0
0
votes
0
replies
1.2k
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.8 years ago
Taub, Margaret
▴ 10
0
votes
2
replies
1.7k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 7.6 years ago by
Gordon Smyth
52k • written 7.7 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.5k
views
Details of gene names in DE
missmethyl
updated 7.8 years ago by
James W. MacDonald
68k • written 7.8 years ago by
r.clifford
• 0
0
votes
1
reply
1.4k
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 7.9 years ago by
belinda.phipson
▴ 40 • written 7.9 years ago by
evani.radiya.dixit
• 0
1
vote
2
replies
1.7k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology
GO
overrepresentation analysis
missmethyl
gostats
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
graggsd
• 0
1
vote
3
replies
3.4k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
8.9 years ago
philipp24
▴ 30
3
votes
3
replies
4.0k
views
missMethyl: Gene ontology analysis
missMethyl
8.9 years ago
philipp24
▴ 30
0
votes
0
replies
1.4k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
8.9 years ago
philipp24
▴ 30
27 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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