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mirna-seq
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2
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9
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5.4k
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how to control age and gender effect in expression data using DESeq2
deseq2
rnaseq
mirna-seq
differential gene expression
written 6.2 years ago by
klalit1803
▴ 10
2
votes
3
replies
1.1k
views
Limma: Differential expression for micro RNA sequence data
mirna-seq
limma
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
Michael Stone
• 0
0
votes
2
replies
947
views
help for package DESeq2 in R
mirna-seq
updated 6.0 years ago by
Levi Waldron
★ 1.1k • written 6.0 years ago by
ndiayediop2
• 0
1
vote
2
replies
804
views
help for deseq2
mirna-seq
6.0 years ago
ndiayediop2
• 0
6
votes
7
replies
2.6k
views
Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
6.0 years ago
atakanekiz
▴ 30
0
votes
1
reply
713
views
How to find non-DE miRNAs using Deseq2 ?
deseq2
differentially expression
mirna-seq
mirna target prediction
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
Björn
• 0
0
votes
3
replies
1.0k
views
DESeq2: would 'contrast' work for serial experiments?
DESeq2
mirna-seq
small RNA-seq
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
CandiceChuDVM
▴ 40
1
vote
2
replies
4.5k
views
Multiple comparisons for DE analysis with DESeq2
deseq2
mirna-seq
experimental design
differential expression
updated 7.1 years ago by
Gavin Kelly
▴ 680 • written 7.1 years ago by
francesco.gandolfi
▴ 10
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA
mirna-seq
updated 7.2 years ago by
Jon Bråte
▴ 250 • written 7.2 years ago by
just
• 0
9 results • Page
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Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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