Showing : microrna • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
23 months ago Lluís Revilla Sancho ▴ 760
1
vote
6
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1.3k
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low counts from microRNA seq
DESeq2 microRNA HTSeq
24 months ago abhay.kanodia • 0
1
vote
4
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1.1k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
2.2 years ago faiza • 0
1
vote
7
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2.4k
views
High padj in DESeq2
deseq2 RNA-seq microRNA
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 10
0
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1
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2.1k
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Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
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1
reply
778
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find genes near a microRNA binding site
R microRNA genes binding Site
5.5 years ago pengu447 • 0
0
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2
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1.6k
views
R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 7.1 years ago by ★ 1.0k • written 7.1 years ago by • 0
0
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4
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1.6k
views
Agilent microrna microaaray
agilent microarrays microrna analysis
7.3 years ago arisarkar88 ▴ 40
0
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0
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935
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gene set enrichment and pathway analysis of gene expression datas
microarray microrna
8.0 years ago n3da.karami • 0
0
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4
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1.4k
views
Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 8.3 years ago by 67k • written 8.3 years ago by ▴ 40
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1.2k
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Combining TLDA cards for normalization
normalization microrna htqpcr
8.4 years ago jamie_jabalee • 0
0
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1
reply
3.0k
views
Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.7 years ago 31sharmajittu1991 • 0
2
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2
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1.8k
views
normalized read count per group from edgeR
microrna edger
8.8 years ago manoharankumar01 • 0
2
votes
6
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1.9k
views
edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 9.1 years ago by ★ 28k • written 9.1 years ago by • 0
2
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1
reply
3.3k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 9.2 years ago by 43k • written 9.2 years ago by ▴ 20
3
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4
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2.8k
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
9.2 years ago mariakarand ▴ 20
0
votes
5
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2.6k
views
RUVseq for microRNAs
ruvseq ruv microrna
9.4 years ago sergio.espeso-gil • 0
0
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1
reply
1.7k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 9.5 years ago by 67k • written 9.5 years ago by • 0
0
votes
2
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1.4k
views
help with array based microRNA data analysis
limma microRNA limma microRNA
updated 10.9 years ago by ★ 1.3k • written 10.9 years ago by ▴ 190
0
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3
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3.6k
views
mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 11.3 years ago by ★ 7.9k • written 11.3 years ago by ▴ 10
0
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2
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2.0k
views
Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.7 years ago by 67k • written 11.7 years ago by ▴ 10
0
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0
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1.5k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.7 years ago Fiona ▴ 70
0
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4
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1.4k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.7 years ago by 67k • written 11.7 years ago by ▴ 70
0
votes
0
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1.9k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.8 years ago Gordon Smyth 52k
0
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4
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1.3k
views
miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 11.8 years ago by 67k • written 11.8 years ago by ▴ 70
0
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1
reply
1.2k
views
taqman versions
microRNA microRNA
updated 12.2 years ago by ▴ 120 • written 12.2 years ago by ▴ 320
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4
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2.0k
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get al microRNA target sites for a given gene
microRNA microRNA
updated 12.2 years ago by 67k • written 12.2 years ago by ▴ 840
0
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4
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2.0k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 12.4 years ago by ★ 1.3k • written 12.4 years ago by ▴ 30
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0
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1.0k
views
Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
12.4 years ago Ali Mohammadian ▴ 290
0
votes
6
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1.5k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ★ 2.0k
0
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5
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6.2k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.8 years ago by ★ 4.2k • written 12.8 years ago by ▴ 930
0
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4
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1.5k
views
A problem about trimLRPatterns
microRNA microRNA
updated 12.8 years ago by ▴ 590 • written 12.8 years ago by ★ 2.0k
0
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0
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924
views
Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
12.9 years ago Kannan Venugopal ▴ 10
0
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5
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1.7k
views
Limma question
limma microRNA limma microRNA
updated 13.0 years ago by ▴ 740 • written 13.0 years ago by ▴ 30
0
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0
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903
views
how to analyze
affy microRNA affy microRNA
13.0 years ago Adrian Johnson ▴ 330
0
votes
6
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2.7k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
13.1 years ago Peter Davidsen ▴ 210
6
votes
11
replies
2.9k
views
edgeR on microRNA data
microRNA edgeR miRNA
13.2 years ago • updated 3.6 years ago Gordon Smyth 52k
0
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2
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1.7k
views
ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
13.3 years ago Julie Zhu ★ 4.3k
0
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1
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1.3k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 13.3 years ago by ★ 2.0k • written 13.4 years ago by ★ 4.1k
0
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0
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914
views
align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
13.4 years ago Hervé Pagès 16k
0
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0
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930
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
13.4 years ago Viki S ▴ 20
0
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1
reply
1.1k
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 13.4 years ago by 67k • written 13.4 years ago by ▴ 10
0
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0
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1.3k
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align microRNA with custom mRNA sequences
microRNA microRNA
13.4 years ago Jason Shoemaker ▴ 80
0
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0
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1.1k
views
dCHip
microRNA microRNA
13.5 years ago Ayse Ulgen ▴ 30
0
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0
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1.5k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.6 years ago chawla ▴ 190
0
votes
8
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1.9k
views
microRNA hg build?
microRNA microRNA
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ★ 1.1k
0
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0
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1.4k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.7 years ago David ▴ 860
0
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8
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2.3k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.7 years ago by ▴ 930 • written 13.7 years ago by ▴ 860
0
votes
1
reply
1.3k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 120
0
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1
reply
1.3k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.9 years ago by ▴ 200 • written 13.9 years ago by ▴ 120
50 results • Page 1 of 1
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Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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