Showing : microrna • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
2.1 years ago Lluís Revilla Sancho ▴ 760
1
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6
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1.4k
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low counts from microRNA seq
DESeq2 microRNA HTSeq
2.2 years ago abhay.kanodia • 0
1
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4
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1.2k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
2.3 years ago faiza • 0
1
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7
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2.7k
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High padj in DESeq2
deseq2 RNA-seq microRNA
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
0
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1
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Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
0
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1
reply
804
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find genes near a microRNA binding site
R microRNA genes binding Site
5.6 years ago pengu447 • 0
0
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2
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1.6k
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R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 7.2 years ago by ★ 1.1k • written 7.2 years ago by • 0
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4
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1.7k
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Agilent microrna microaaray
agilent microarrays microrna analysis
7.5 years ago arisarkar88 ▴ 40
0
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0
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968
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gene set enrichment and pathway analysis of gene expression datas
microarray microrna
8.2 years ago n3da.karami • 0
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4
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1.4k
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Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 40
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1.2k
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Combining TLDA cards for normalization
normalization microrna htqpcr
8.6 years ago jamie_jabalee • 0
0
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1
reply
3.0k
views
Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.9 years ago 31sharmajittu1991 • 0
2
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2
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1.9k
views
normalized read count per group from edgeR
microrna edger
8.9 years ago manoharankumar01 • 0
2
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6
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1.9k
views
edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 9.3 years ago by ★ 28k • written 9.3 years ago by • 0
2
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1
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3.4k
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Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 9.3 years ago by 43k • written 9.3 years ago by ▴ 20
3
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4
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2.9k
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
9.4 years ago mariakarand ▴ 20
0
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5
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2.6k
views
RUVseq for microRNAs
ruvseq ruv microrna
9.6 years ago • updated 9.5 years ago sergio.espeso-gil • 0
0
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1
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1.8k
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The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
0
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2
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1.4k
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help with array based microRNA data analysis
limma microRNA limma microRNA
updated 11.1 years ago by ★ 1.3k • written 11.1 years ago by ▴ 190
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3
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3.6k
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mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 11.5 years ago by ★ 7.9k • written 11.5 years ago by ▴ 10
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2
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2.0k
views
Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 10
0
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0
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1.6k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.9 years ago Fiona ▴ 70
0
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4
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1.4k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.9 years ago by 68k • written 11.9 years ago by ▴ 70
0
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0
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1.9k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
12.0 years ago Gordon Smyth 52k
0
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4
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1.3k
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miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 70
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1
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1.3k
views
taqman versions
microRNA microRNA
updated 12.3 years ago by ▴ 120 • written 12.3 years ago by ▴ 320
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4
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2.1k
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get al microRNA target sites for a given gene
microRNA microRNA
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 840
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4
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2.0k
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Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 12.5 years ago by ★ 1.3k • written 12.5 years ago by ▴ 30
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Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
12.6 years ago Ali Mohammadian ▴ 290
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6
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1.6k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ★ 2.0k
0
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5
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6.3k
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extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ▴ 930
0
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4
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1.5k
views
A problem about trimLRPatterns
microRNA microRNA
updated 13.0 years ago by ▴ 590 • written 13.0 years ago by ★ 2.0k
0
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0
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946
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Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
13.1 years ago Kannan Venugopal ▴ 10
0
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5
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1.8k
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Limma question
limma microRNA limma microRNA
updated 13.2 years ago by ▴ 740 • written 13.2 years ago by ▴ 30
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0
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924
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how to analyze
affy microRNA affy microRNA
13.2 years ago Adrian Johnson ▴ 330
0
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6
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2.8k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
13.2 years ago Peter Davidsen ▴ 210
6
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11
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3.0k
views
edgeR on microRNA data
microRNA edgeR miRNA
13.4 years ago • updated 3.7 years ago Gordon Smyth 52k
0
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2
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1.7k
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
13.5 years ago Julie Zhu ★ 4.3k
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1
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1.4k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 13.5 years ago by ★ 2.0k • written 13.5 years ago by ★ 4.1k
0
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0
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940
views
align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
13.5 years ago Hervé Pagès 16k
0
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0
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960
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
13.6 years ago Viki S ▴ 20
0
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1
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1.1k
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 10
0
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0
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1.3k
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align microRNA with custom mRNA sequences
microRNA microRNA
13.6 years ago Jason Shoemaker ▴ 80
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0
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1.1k
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dCHip
microRNA microRNA
13.7 years ago Ayse Ulgen ▴ 30
0
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0
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1.5k
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.8 years ago chawla ▴ 190
0
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8
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2.0k
views
microRNA hg build?
microRNA microRNA
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ★ 1.1k
0
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0
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1.4k
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GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.9 years ago David ▴ 860
0
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8
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2.4k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.9 years ago by ▴ 930 • written 13.9 years ago by ▴ 860
0
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1
reply
1.4k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 14.0 years ago by ★ 8.2k • written 14.0 years ago by ▴ 120
0
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1
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1.4k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 14.1 years ago by ▴ 200 • written 14.1 years ago by ▴ 120
50 results • Page 1 of 1
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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…
Answer: cameraPR() non directional test by Gordon Smyth 52k
Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
Answer: WGCNA with paired samples by Ivo • 0
You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Votes
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: Plot title for PCA in DESeq2
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