Showing : microRNA • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
22 months ago Lluís Revilla Sancho ▴ 760
1
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6
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1.3k
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low counts from microRNA seq
DESeq2 microRNA HTSeq
23 months ago abhay.kanodia • 0
1
vote
4
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1.1k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
2.1 years ago faiza • 0
1
vote
7
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2.2k
views
High padj in DESeq2
deseq2 RNA-seq microRNA
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 10
0
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1
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2.0k
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Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
0
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1
reply
766
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find genes near a microRNA binding site
R microRNA genes binding Site
5.4 years ago pengu447 • 0
0
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2
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1.5k
views
R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 7.0 years ago by ★ 1.0k • written 7.0 years ago by • 0
0
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4
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1.6k
views
Agilent microrna microaaray
agilent microarrays microrna analysis
7.2 years ago arisarkar88 ▴ 40
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0
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926
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gene set enrichment and pathway analysis of gene expression datas
microarray microrna
7.9 years ago n3da.karami • 0
0
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4
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1.4k
views
Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 8.2 years ago by 67k • written 8.2 years ago by ▴ 40
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0
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1.2k
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Combining TLDA cards for normalization
normalization microrna htqpcr
8.3 years ago jamie_jabalee • 0
0
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1
reply
3.0k
views
Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.6 years ago 31sharmajittu1991 • 0
2
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2
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1.8k
views
normalized read count per group from edgeR
microrna edger
8.7 years ago manoharankumar01 • 0
2
votes
6
replies
1.9k
views
edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 9.1 years ago by ★ 28k • written 9.1 years ago by • 0
2
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1
reply
3.3k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 9.1 years ago by 43k • written 9.1 years ago by ▴ 20
3
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4
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2.8k
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
9.1 years ago mariakarand ▴ 20
0
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5
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2.5k
views
RUVseq for microRNAs
ruvseq ruv microrna
9.3 years ago sergio.espeso-gil • 0
0
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1
reply
1.7k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 9.4 years ago by 67k • written 9.4 years ago by • 0
0
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2
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1.4k
views
help with array based microRNA data analysis
limma microRNA limma microRNA
updated 10.8 years ago by ★ 1.3k • written 10.8 years ago by ▴ 190
0
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3
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3.5k
views
mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 11.3 years ago by ★ 7.9k • written 11.3 years ago by ▴ 10
0
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2
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2.0k
views
Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.6 years ago by 67k • written 11.6 years ago by ▴ 10
0
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0
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1.5k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.7 years ago Fiona ▴ 70
0
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4
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1.4k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.7 years ago by 67k • written 11.7 years ago by ▴ 70
0
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0
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1.9k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.8 years ago Gordon Smyth 51k
0
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4
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1.3k
views
miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 11.8 years ago by 67k • written 11.8 years ago by ▴ 70
0
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1
reply
1.2k
views
taqman versions
microRNA microRNA
updated 12.1 years ago by ▴ 120 • written 12.1 years ago by ▴ 320
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4
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2.0k
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get al microRNA target sites for a given gene
microRNA microRNA
updated 12.1 years ago by 67k • written 12.1 years ago by ▴ 840
0
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4
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2.0k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 12.3 years ago by ★ 1.3k • written 12.3 years ago by ▴ 30
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0
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1.0k
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Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
12.3 years ago Ali Mohammadian ▴ 290
0
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6
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1.5k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ★ 2.0k
0
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5
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6.2k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.7 years ago by ★ 4.2k • written 12.7 years ago by ▴ 930
0
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4
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1.5k
views
A problem about trimLRPatterns
microRNA microRNA
updated 12.7 years ago by ▴ 590 • written 12.7 years ago by ★ 2.0k
0
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0
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919
views
Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
12.8 years ago Kannan Venugopal ▴ 10
0
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5
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1.7k
views
Limma question
limma microRNA limma microRNA
updated 12.9 years ago by ▴ 740 • written 12.9 years ago by ▴ 30
0
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0
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896
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how to analyze
affy microRNA affy microRNA
13.0 years ago Adrian Johnson ▴ 330
0
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6
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2.7k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
13.0 years ago Peter Davidsen ▴ 210
6
votes
11
replies
2.9k
views
edgeR on microRNA data
microRNA edgeR miRNA
13.2 years ago • updated 3.5 years ago Gordon Smyth 51k
0
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2
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1.7k
views
ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
13.2 years ago Julie Zhu ★ 4.3k
0
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1
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1.3k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 13.3 years ago by ★ 2.0k • written 13.3 years ago by ★ 4.1k
0
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0
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905
views
align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
13.3 years ago Hervé Pagès 16k
0
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0
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920
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
13.3 years ago Viki S ▴ 20
0
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1
reply
1.1k
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 13.4 years ago by 67k • written 13.4 years ago by ▴ 10
0
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0
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1.3k
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align microRNA with custom mRNA sequences
microRNA microRNA
13.4 years ago Jason Shoemaker ▴ 80
0
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0
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1.1k
views
dCHip
microRNA microRNA
13.4 years ago Ayse Ulgen ▴ 30
0
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0
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1.5k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.5 years ago chawla ▴ 190
0
votes
8
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1.9k
views
microRNA hg build?
microRNA microRNA
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ★ 1.1k
0
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0
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1.4k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.7 years ago David ▴ 860
0
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8
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2.3k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.7 years ago by ▴ 930 • written 13.7 years ago by ▴ 860
0
votes
1
reply
1.3k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ▴ 120
0
votes
1
reply
1.3k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.8 years ago by ▴ 200 • written 13.8 years ago by ▴ 120
50 results • Page 1 of 1
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Replies
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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