Showing : microRNA • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
17 months ago Lluís Revilla Sancho ▴ 730
1
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6
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1.1k
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low counts from microRNA seq
DESeq2 microRNA HTSeq
18 months ago abhay.kanodia • 0
1
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4
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895
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
20 months ago faiza • 0
1
vote
7
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1.7k
views
High padj in DESeq2
deseq2 RNA-seq microRNA
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by ▴ 10
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1
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1.6k
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Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.2 years ago by 42k • written 4.2 years ago by • 0
0
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1
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643
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find genes near a microRNA binding site
R microRNA genes binding Site
5.0 years ago pengu447 • 0
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2
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1.4k
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R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 6.6 years ago by ★ 1.0k • written 6.6 years ago by • 0
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4
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1.5k
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Agilent microrna microaaray
agilent microarrays microrna analysis
6.8 years ago arisarkar88 ▴ 40
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0
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854
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gene set enrichment and pathway analysis of gene expression datas
microarray microrna
7.5 years ago n3da.karami • 0
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4
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1.2k
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Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 7.8 years ago by 66k • written 7.8 years ago by ▴ 40
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1.1k
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Combining TLDA cards for normalization
normalization microrna htqpcr
7.9 years ago jamie_jabalee • 0
0
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1
reply
2.9k
views
Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.2 years ago 31sharmajittu1991 • 0
2
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2
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1.6k
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normalized read count per group from edgeR
microrna edger
8.3 years ago manoharankumar01 • 0
2
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6
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1.7k
views
edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 8.7 years ago by ★ 28k • written 8.7 years ago by • 0
2
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1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 8.7 years ago by 42k • written 8.7 years ago by ▴ 20
3
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4
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2.6k
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
8.7 years ago mariakarand ▴ 20
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5
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2.3k
views
RUVseq for microRNAs
ruvseq ruv microrna
8.9 years ago sergio.espeso-gil • 0
0
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1
reply
1.6k
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The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 9.0 years ago by 66k • written 9.0 years ago by • 0
0
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2
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1.2k
views
help with array based microRNA data analysis
limma microRNA limma microRNA
updated 10.4 years ago by ★ 1.3k • written 10.4 years ago by ▴ 190
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3
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3.3k
views
mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 10.9 years ago by ★ 7.9k • written 10.9 years ago by ▴ 10
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2
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1.9k
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Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.2 years ago by 66k • written 11.2 years ago by ▴ 10
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0
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1.4k
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identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.2 years ago Fiona ▴ 70
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4
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1.3k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.3 years ago by 66k • written 11.3 years ago by ▴ 70
0
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0
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1.8k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.3 years ago Gordon Smyth 51k
0
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4
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1.2k
views
miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 11.3 years ago by 66k • written 11.3 years ago by ▴ 70
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1
reply
1.2k
views
taqman versions
microRNA microRNA
updated 11.7 years ago by ▴ 120 • written 11.7 years ago by ▴ 320
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4
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1.9k
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get al microRNA target sites for a given gene
microRNA microRNA
updated 11.7 years ago by 66k • written 11.7 years ago by ▴ 840
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4
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1.8k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 11.9 years ago by ★ 1.3k • written 11.9 years ago by ▴ 30
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924
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Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
11.9 years ago Ali Mohammadian ▴ 290
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6
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1.4k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ★ 2.0k
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5
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6.0k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.3 years ago by ★ 4.2k • written 12.3 years ago by ▴ 930
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4
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1.3k
views
A problem about trimLRPatterns
microRNA microRNA
updated 12.3 years ago by ▴ 590 • written 12.3 years ago by ★ 2.0k
0
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0
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842
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Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
12.4 years ago Kannan Venugopal ▴ 10
0
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5
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1.6k
views
Limma question
limma microRNA limma microRNA
updated 12.5 years ago by ▴ 740 • written 12.5 years ago by ▴ 30
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0
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817
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how to analyze
affy microRNA affy microRNA
12.6 years ago Adrian Johnson ▴ 330
0
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6
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2.5k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
12.6 years ago Peter Davidsen ▴ 210
6
votes
11
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2.7k
views
edgeR on microRNA data
microRNA edgeR miRNA
12.8 years ago • updated 3.1 years ago Gordon Smyth 51k
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2
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1.6k
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
12.8 years ago Julie Zhu ★ 4.3k
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1
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1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 12.9 years ago by ★ 2.0k • written 12.9 years ago by ★ 4.0k
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0
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821
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align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
12.9 years ago Hervé Pagès 16k
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0
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839
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
12.9 years ago Viki S ▴ 20
0
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1
reply
996
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 12.9 years ago by 66k • written 12.9 years ago by ▴ 10
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0
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1.2k
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align microRNA with custom mRNA sequences
microRNA microRNA
13.0 years ago Jason Shoemaker ▴ 80
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0
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986
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dCHip
microRNA microRNA
13.0 years ago Ayse Ulgen ▴ 30
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0
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1.4k
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.1 years ago chawla ▴ 190
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8
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1.7k
views
microRNA hg build?
microRNA microRNA
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ★ 1.1k
0
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0
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1.3k
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GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.3 years ago David ▴ 860
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8
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2.1k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.3 years ago by ▴ 930 • written 13.3 years ago by ▴ 860
0
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1
reply
1.2k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.3 years ago by ★ 8.2k • written 13.3 years ago by ▴ 120
0
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1
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1.2k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.4 years ago by ▴ 200 • written 13.4 years ago by ▴ 120
50 results • Page 1 of 1
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Answer: Ranking the GSEA Results by Michael Love 42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR by Gordon Smyth 51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database by gallantk5 • 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database by gallantk5 • 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database by Sean Davis 21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
Votes
Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
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