Showing : limmaGUI • reset
6
votes
4
replies
997
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.3 years ago Giovanni • 0
3
votes
6
replies
6.8k
views
Unable to install "limma" package on RStudio
Bioconductor limma limmaGUI
2.2 years ago jaydengitt • 0
2
votes
5
replies
1.7k
views
NA coefficients values for samples with all zeros
limmagui proteomics
8.5 years ago vedran.franke • 0
2
votes
6
replies
1.1k
views
Limma beta coefficient confidence intervals
limma limmaGUI beta
22 months ago fluentin44 • 0
1
vote
2
replies
981
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
19 months ago walkerrh95 • 0
1
vote
4
replies
435
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 3 months ago by 50k • written 3 months ago by ▴ 10
1
vote
1
reply
798
views
Weird distribution of p-values, with no significant adjusted p-values?
fdr limmaGUI p-values limma
updated 19 months ago by 65k • written 19 months ago by • 0
1
vote
5
replies
2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.9 years ago by • 0 • written 14.6 years ago by ▴ 60
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
1
vote
5
replies
1.1k
views
Does voom normalization quantile create difference in DGE genes when distribution of patients is similar (no big differences in quantiles)?
limmaGUI normalization limma voom Normalization
updated 10 months ago by 50k • written 10 months ago by • 0
1
vote
3
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368
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 4 weeks ago by 50k • written 5 weeks ago by • 0
0
votes
0
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1.0k
views
Re: LimmaGUI
Genetics limma limmaGUI Genetics limma limmaGUI
20.2 years ago James Wettenhall ▴ 1000
0
votes
1
reply
796
views
Setting the spacing between duplicates in limmaGUI
limmaGUI limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 80
0
votes
0
replies
789
views
limmaGUI problem
limma limmaGUI limma limmaGUI
20.2 years ago Ron Ophir ▴ 80
0
votes
1
reply
967
views
LimmaGUI
limmaGUI limmaGUI
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 100
0
votes
0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.6k
views
Analysis Interface Projects
limma limmaGUI limma limmaGUI
updated 20.7 years ago by ▴ 160 • written 20.7 years ago by ▴ 1000
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
0
votes
1
reply
805
views
limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 760
0
votes
0
replies
653
views
How to do normalization without backgroundsubtraction in limmaGUI or limma?
Normalization limma limmaGUI Normalization limma limmaGUI
20.6 years ago ying chen ▴ 30
0
votes
0
replies
801
views
limmaGUI & affylmGUI new features/fixes
Genetics Normalization limmaGUI Genetics Normalization limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
0
replies
751
views
limmaGUI update
limma limmaGUI limma limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.1k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
2
replies
883
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 10
0
votes
2
replies
1.3k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 50
0
votes
0
replies
873
views
limmaGUI_1.2.5 ImaGene fix
limmaGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 160
0
votes
1
reply
910
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 30
0
votes
0
replies
808
views
Re: limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
19.8 years ago Elizabeth Brooke-Powell ▴ 160
0
votes
1
reply
852
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 19.7 years ago by ▴ 1000 • written 19.7 years ago by ▴ 100
0
votes
0
replies
1.1k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
20.0 years ago James Wettenhall ▴ 1000
0
votes
2
replies
893
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization limmaGUI Normalization limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 40
0
votes
1
reply
1.6k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization limma limmaGUI Normalization limma limmaGUI
updated 15.6 years ago by ▴ 320 • written 15.6 years ago by ▴ 90
0
votes
1
reply
888
views
problem in limmaGUI with Heat Diagram
limma limmaGUI limma limmaGUI
updated 19.4 years ago by ▴ 1000 • written 19.4 years ago by ▴ 50
0
votes
0
replies
753
views
gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
20.0 years ago James Wettenhall ▴ 1000
0
votes
0
replies
767
views
Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
19.5 years ago Breuk102 ▴ 50
0
votes
2
replies
963
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.5 years ago by 50k • written 19.5 years ago by ▴ 50
0
votes
0
replies
1.2k
views
Problem with limmaGui loading- "Tcl/Tk Extension(s) Not Found"
limmaGUI limmaGUI
19.1 years ago Noam Drigues ▴ 10
0
votes
1
reply
783
views
Bioconductor or R courses
GO limma limmaGUI GO limma limmaGUI
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 170
0
votes
0
replies
655
views
LimmaGUI discards spots with no signal on one channel??
limmaGUI limmaGUI
19.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
0
replies
898
views
MA plot (using fitted M values)
limmaGUI limmaGUI
19.1 years ago Choon Wei Wee ▴ 10
0
votes
4
replies
1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
19.1 years ago Gordon Smyth 50k
0
votes
0
replies
527
views
Help with Duplicates
limmaGUI limmaGUI
19.0 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
9
replies
1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.9 years ago • updated 18.8 years ago chris umbricht ▴ 110
0
votes
2
replies
861
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 18.9 years ago by ▴ 40 • written 18.9 years ago by ▴ 110
0
votes
3
replies
1.2k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 18.8 years ago by ★ 3.4k • written 18.8 years ago by ▴ 170
0
votes
0
replies
1.3k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
858
views
spot filtering
limma limmaGUI limma limmaGUI
18.8 years ago Gordon Smyth 50k
0
votes
0
replies
683
views
LimmaGUI Error
Normalization GO limmaGUI Normalization GO limmaGUI
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
935
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
20.0 years ago James Wettenhall ▴ 1000
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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