Bioconductor Junctionseq

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DEXSeq JunctionSeq RNAseq QoRTs

4.0 years ago • updated 3.9 years ago n.tear ▴ 20

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junctionseq splicing RNAseq DEXSeq

5.2 years ago stuart ▴ 10

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957

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JunctionSeq

7.8 years ago rachelrodgers12 • 0

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971

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junctionseq relevel reference

8.0 years ago Assa Yeroslaviz ★ 1.5k

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junctionseq qorts multiple factor design relevel

8.0 years ago Assa Yeroslaviz ★ 1.5k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 8.1 years ago by Steve Lianoglou ★ 13k • written 8.1 years ago by l.frank • 0

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959

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junctionseq

8.2 years ago jbono ▴ 10

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junctionseq design and contrast matrix

8.3 years ago stuart • 0

8 results • Page 1 of 1

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Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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