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junctionseq
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2
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1.5k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
4.2 years ago • updated 4.1 years ago
n.tear
▴ 20
0
votes
1
reply
1.1k
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
5.4 years ago
stuart
▴ 10
0
votes
1
reply
989
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
8.0 years ago
rachelrodgers12
• 0
0
votes
0
replies
996
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
8.2 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
1.1k
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
8.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.6k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 8.3 years ago by
Steve Lianoglou
★ 13k • written 8.3 years ago by
l.frank
• 0
0
votes
0
replies
995
views
Problems running JunctionSeq
junctionseq
8.4 years ago
jbono
▴ 10
0
votes
0
replies
1.0k
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
8.5 years ago
stuart
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirectportal.com
• 0
This is a great post. I like this topic. I found many interesting things from this site. Thanks for posting this again https://www.njmcdire…
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Votes
Bioconductor 3.21 is Released!
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
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