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JunctionSeq
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2
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2
replies
1.2k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
3.2 years ago
n.tear
▴ 20
0
votes
1
reply
828
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.5 years ago
stuart
▴ 10
0
votes
1
reply
836
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
7.1 years ago
rachelrodgers12
• 0
0
votes
0
replies
833
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.2 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
946
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
7.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.4k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 7.4 years ago by
Steve Lianoglou
★ 13k • written 7.4 years ago by
l.frank
• 0
0
votes
0
replies
833
views
Problems running JunctionSeq
junctionseq
7.5 years ago
jbono
▴ 10
0
votes
0
replies
850
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
7.6 years ago
stuart
• 0
8 results • Page
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Recent ...
Replies
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 220
Looks like `sgv_pred` does not have the expected format. Was it created or edited manually? I would always recommend creating objects with …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you:)
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you! But I apologize for cannot fully grasp your point. Do you mean that when the counts are high, rlogged matrix can represent the t…
Comment: Query regarding phyloseq object construct with QIIME output
by
Rosso
• 0
Constructing a phyloseq object from QIIME output involves several steps to integrate taxonomic abundance data, sample metadata, and phyloge…
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Votes
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
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