Showing : hgu133plus2 • reset
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Error: package ‘hgu133plus2’
hgu133plus2
updated 13 months ago by 3.9k • written 13 months ago by • 0
2
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1
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1.9k
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.4 years ago by ▴ 20 • written 11.2 years ago by ▴ 340
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4
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
6.4 years ago rahil ▴ 30
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hgu133plus2cdf cant download
normalization hgu133plus2
6.7 years ago marion.ryan • 0
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error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 7.2 years ago by 66k • written 7.2 years ago by ▴ 840
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4
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1.5k
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about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 7.3 years ago by ▴ 10 • written 15.0 years ago by ▴ 430
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HGU133PLUS.db : NA's when using getSYMBOL while uptodate NetAffx database gives gene names
Annotation hgu133plus2
updated 7.3 years ago by 66k • written 7.3 years ago by • 0
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Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
9.2 years ago • updated 7.6 years ago IOM ▴ 20
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5
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2.3k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.2 years ago by ▴ 110 • written 12.1 years ago by ▴ 760
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 8.5 years ago by ▴ 360 • written 8.5 years ago by • 0
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3
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2.5k
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HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
9.2 years ago kanacska ▴ 10
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3
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2.0k
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Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 9.3 years ago by 66k • written 9.3 years ago by ▴ 10
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2
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1.3k
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problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.5 years ago by 66k • written 9.5 years ago by • 0
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2
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HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ★ 13k
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views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
9.7 years ago Guest User ★ 13k
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1
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1.6k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 9.8 years ago by ▴ 390 • written 9.8 years ago by ▴ 10
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8.9k
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virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
10.0 years ago Guest User ★ 13k
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5
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2.3k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 10.0 years ago by 50k • written 10.0 years ago by ★ 13k
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3
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2.2k
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BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 10.2 years ago by ★ 8.2k • written 10.2 years ago by ▴ 10
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Problem with geneAnswers, Reactome and some converted affy IDs
hgu133plus2 probe hgu133plus2 probe
10.2 years ago Ulrik Stervbo ▴ 30
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1
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14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 10.5 years ago by ★ 1.6k • written 10.5 years ago by ★ 13k
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1
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2.7k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 10.5 years ago by ★ 3.9k • written 10.5 years ago by ▴ 10
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Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 10.5 years ago by ▴ 80 • written 10.5 years ago by ▴ 20
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4
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3.7k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 10.5 years ago by 66k • written 10.5 years ago by ★ 13k
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0
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virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2 virtualArray hgu133plus2 virtualArray
10.5 years ago Guest User ★ 13k
0
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0
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1.7k
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Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
10.6 years ago Guest User ★ 13k
0
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2
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1.3k
views
segfault ReadAffy cause 'memory not mapped'
Cancer hgu133plus2 affy PROcess Cancer hgu133plus2 affy PROcess
updated 10.6 years ago by ★ 1.2k • written 10.6 years ago by ▴ 70
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1.7k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.7 years ago b a ▴ 40
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1.0k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
10.7 years ago b a ▴ 40
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2
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1.7k
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Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 10.8 years ago by ▴ 240 • written 10.8 years ago by ★ 1.1k
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1
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1.7k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 10.9 years ago by 66k • written 10.9 years ago by ▴ 90
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2
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2.0k
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Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 40
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2
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1.6k
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inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
11.0 years ago Ed Siefker ▴ 230
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0
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1.3k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.1 years ago Daniel Emden ▴ 10
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0
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1.2k
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
11.2 years ago Kishor Tappita ▴ 340
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2
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1.2k
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Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 11.5 years ago by ★ 2.0k • written 11.5 years ago by 50k
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4
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views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ★ 13k
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6
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1.7k
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outlier probes detection
hgu133plus2 hgu133plus2
updated 12.1 years ago by ▴ 210 • written 12.1 years ago by ▴ 240
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3
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1.4k
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.1 years ago Mayte Suarez-Farinas ▴ 510
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1
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1.3k
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error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.1 years ago by 66k • written 12.1 years ago by ▴ 240
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3
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1.4k
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GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 12.1 years ago by 66k • written 12.1 years ago by ▴ 120
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2
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2.4k
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Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 12.2 years ago by ★ 1.9k • written 12.2 years ago by ▴ 230
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4
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1.4k
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Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
12.2 years ago Fabrice Tourre ▴ 970
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1
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1.3k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.3 years ago by ▴ 830 • written 12.3 years ago by ▴ 20
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1
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984
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 12.3 years ago by 66k • written 12.3 years ago by ★ 13k
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1
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1.4k
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refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 240
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854
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Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
hgu133plus2 hgu133plus2
12.5 years ago Guest User ★ 13k
0
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4
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1.7k
views
annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 380
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1
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970
views
a question for SPIA package
Annotation hgu133plus2 Annotation hgu133plus2
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 380
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0
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1.1k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
12.8 years ago Valerie Obenchain ★ 6.8k
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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